Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,550,601 – 2,550,693 |
Length | 92 |
Max. P | 0.931514 |
Location | 2,550,601 – 2,550,693 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.19 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -20.76 |
Energy contribution | -20.73 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.15 |
Mean z-score | -1.59 |
Structure conservation index | 0.91 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2550601 92 - 22407834 AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAGCUAGCUAAAUGCACUCCUGCUGAAG ..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90) >DroSec_CAF1 129911 92 - 1 AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG ..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90) >DroSim_CAF1 133191 92 - 1 AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG ..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90) >DroEre_CAF1 134191 92 - 1 AUCUUCAGUGUUUGAUCAAAGUUUGGCCAUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG ..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90) >DroYak_CAF1 133936 91 - 1 AUCUUCAGUGUUUGAUCA-AGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAGAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG ..((((((((((((....-.(((((((....(((.....))))))))))((((...))))...)))))..((.....))......))))))) ( -25.70) >DroAna_CAF1 182027 91 - 1 CUC-UUAAUGUUUGAUGAGAGUUGGGCUGCAAGUGUGCAACUGCCAAACACUCAAAAAGUCAACAAACUAACUAAAUACACUCCGGUUGAAG ...-...........((((.(((.(((((((....))))...))).))).)))).....(((((.....................))))).. ( -16.30) >consensus AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG ..((((((((((((......(((((((....(((.....))))))))))(((.....)))...)))))..((.....))......))))))) (-20.76 = -20.73 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:07 2006