Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,550,377 – 2,550,485 |
Length | 108 |
Max. P | 0.824337 |
Location | 2,550,377 – 2,550,485 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.79 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -28.02 |
Energy contribution | -28.10 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.03 |
Mean z-score | -1.31 |
Structure conservation index | 0.93 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2550377 108 - 22407834 -GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAGCCCGUGCAC-CCACUGCAAAGUGUGCGCCGGAAACGGA -.......................((((.........((..((((....(((.((......)).))).....))))..)).-.((((....))))))))(((....))). ( -30.10) >DroSec_CAF1 129687 108 - 1 -GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAACCCGUGCAC-CCACUGCAAAGUGUGCGCCGGAAACGGA -....((((((.(((.(((.((..(((((.........)))))..))......))).)))...)))))).....((..(((-..........)))..))(((....))). ( -29.60) >DroSim_CAF1 132967 108 - 1 -GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCGGGGAACCCGUGCAC-CCACUGCAAAGUGUGCGCCGGAAACGGA -........(((.((.....((..(((((.........)))))..)).........(((.((.((((((...)))).)).)-).))).....)).))).(((....))). ( -30.60) >DroEre_CAF1 133955 109 - 1 UGAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAAACCGUGCAG-CCACUGCAAAGUGUGCGCCGGAAACGGA .......((((.(((.(((.((..(((((.........)))))..))......))).)))...))))((....)).....(-(((((....)))).)).(((....))). ( -30.10) >DroYak_CAF1 133693 110 - 1 UGAAACUGGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAAACCGUGCAACCCACUGCAAAGUGUGCGCCGGAAACGGA .(..(((..((.........((..(((((.........)))))..)).........(((.((.((.(((....))).))..)).)))))..)))...).(((....))). ( -29.80) >consensus _GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAACCCGUGCAC_CCACUGCAAAGUGUGCGCCGGAAACGGA .....((((((.(((.(((.((..(((((.........)))))..))......))).)))...))))))....(((((((...((((....))))))))).(....))). (-28.02 = -28.10 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:06 2006