Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,543,111 – 2,543,201 |
Length | 90 |
Max. P | 0.564982 |
Location | 2,543,111 – 2,543,201 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -19.14 |
Consensus MFE | -11.77 |
Energy contribution | -11.91 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.15 |
Mean z-score | -1.73 |
Structure conservation index | 0.61 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2543111 90 + 22407834 AUU-UAUUUCCUCCCUUCACCCUGGCGGGCCCUUCCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA--- ...-.....(((.((........)).)))............((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -19.90) >DroVir_CAF1 230969 96 + 1 UUUUUUUAUCAUCUUUUAU---UUAUGGAGCCUGUAAAUAAGCAUGAUAAUAACUUUAUAGUGUUAAAUGGCGCACAAUAUCA-AAAGGCAGUCCGAAAA .....(((((((..(((((---((((((...))))))))))).)))))))..........(((((....))))).........-...((....))..... ( -13.80) >DroSec_CAF1 122573 90 + 1 AUU-UAUUUGCUCCCUUCACCCUGGCGGGCCCUUUCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA--- ...-.....((((((........)).))))...........((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -22.40) >DroSim_CAF1 125780 90 + 1 AUU-UAUUUGCUCCCUUCACCCUGGCGGGCCCUUUCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA--- ...-.....((((((........)).))))...........((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -22.40) >DroEre_CAF1 125897 90 + 1 AUG-UAUUUCUUCCCUUCUCCCCGGCCGGCCCUUCGAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA--- ...-...................(((((((((.........((((.((((.....)))).)))).....)))))..........-.-))----))..--- ( -19.74) >DroYak_CAF1 126312 90 + 1 AUU-UAUUUCUUCCCUGCUCCCUGGCAAGACCUUCGAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CUCA--- ...-....((((.((........)).))))...........((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -16.60) >consensus AUU_UAUUUCCUCCCUUCACCCUGGCGGGCCCUUCCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU_U_GG____CCCA___ ...........................(((((.........((((.((((.....)))).)))).....))))).......................... (-11.77 = -11.91 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:05 2006