Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 304,661 – 304,755 |
Length | 94 |
Max. P | 0.993237 |
Location | 304,661 – 304,755 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 73.08 |
Mean single sequence MFE | -14.70 |
Consensus MFE | -9.25 |
Energy contribution | -9.75 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.21 |
Structure conservation index | 0.63 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 304661 94 + 22407834 ACAAAACAAAUAAGAACUCAAAAACAAAAAAGUAGCAGUGGAAGAUUGAAUGUAUUUCAAAUAUGAUUGAUU-GAUGUCAAUAAUGUUUGCUAAC ................................((((((.......(((((.....)))))((((.((((((.-...)))))).)))))))))).. ( -12.90) >DroPse_CAF1 9150 82 + 1 -----ACAAAAAAAGAAACAAAUACCAAUACGUAGCAGAACCAGAUUAAAUGUGUUCUAAUCAUGAUUGAUGCGCAAUCAAUCAUG--------C -----...............................(((((((.......)).)))))...((((((((((.....))))))))))--------. ( -16.50) >DroSim_CAF1 9278 89 + 1 -----ACAAAUAAGAACUCAAAAACAAAAAAGUAGCAGUGGAAGAUUGAAUGUAUUUCAAAUAUGAUUGAUU-GAUGUCAAUAAUGUUUGCUAAC -----...........................((((((.......(((((.....)))))((((.((((((.-...)))))).)))))))))).. ( -12.90) >DroPer_CAF1 9171 82 + 1 -----ACAAAAAAAGAAACAAAUACCAAUACGUAGCAGAACCAGAUUAAAUGUGUUCUAAUCAUGAUUGAUGCGCAAUCAAUCAUG--------C -----...............................(((((((.......)).)))))...((((((((((.....))))))))))--------. ( -16.50) >consensus _____ACAAAAAAAAAAACAAAAACAAAAAAGUAGCAGAACAAGAUUAAAUGUAUUCCAAACAUGAUUGAUG_GAAAUCAAUAAUG________C ...........................................(((((((.....)))))))(((((((((.....))))))))).......... ( -9.25 = -9.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:24 2006