Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,531,434 – 2,531,544 |
Length | 110 |
Max. P | 0.732721 |
Location | 2,531,434 – 2,531,544 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.28 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -19.25 |
Energy contribution | -18.75 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.29 |
Mean z-score | -1.71 |
Structure conservation index | 0.77 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2531434 110 - 22407834 GCU----AGACAUUUGGCAGCUGCAGUCGUCGUAAGUCGAAAGCGGCACGAAGCUCGAUU-AAAGCCACAAGGCAGCAGAG--UCCCAGAAAAUAACGAAAAAAUACAGCACA-AUAC (((----.....(((((..(((((..(((.(....).)))..))))).....((((....-...(((....)))....)))--).))))).......(........))))...-.... ( -26.60) >DroEre_CAF1 114310 111 - 1 GCU----AGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG--UCACCGAAAAUAACGAAAAAAUACAGCACA-AUAC (((----.((((((((((.(((((..(((.(....).)))..))))).....)).)))))....(((....)))......)--))..((.......)).........)))...-.... ( -26.00) >DroYak_CAF1 114521 111 - 1 GCU----AGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG--UCACAAAAAAUAACGAAAAACUACAACACA-AUAC ...----.((((((((((.(((((..(((.(....).)))..))))).....)).)))))....(((....)))......)--))............................-.... ( -23.90) >DroAna_CAF1 144808 115 - 1 ACUUGGAAGACAUUUGGCAGCUGCAAUUGUCGCAAGUUGGAGGCA-CACCGAGCACGAAUAAAAGCCACAAGGCAGCGAAGAGUACCAAAAAA--AAUAGGAACUACAGCACAAAUAC ...........(((((((.(((((..((((.((...(((..(((.-......)).)...)))..)).)))).)))))....(((.((......--....)).)))...)).))))).. ( -23.40) >consensus GCU____AGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG__UCACAAAAAAUAACGAAAAAAUACAGCACA_AUAC ................((.(((((..(((.(....).)))..))))).................(((....))).))......................................... (-19.25 = -18.75 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:59 2006