Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,526,524 – 2,526,616 |
Length | 92 |
Max. P | 0.682881 |
Location | 2,526,524 – 2,526,616 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.65 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -14.10 |
Energy contribution | -15.18 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.23 |
Mean z-score | -2.33 |
Structure conservation index | 0.47 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2526524 92 + 22407834 CAUAUAUAACGCACAUGACCAUACAUACAGUGCC--------ACCUCCAACCUGAUUUUCCGGGAAAA------CUGGUACUGGA---CCAACUGGUGGUACUGAUGGU .................(((((.....(((((((--------(((.....((((......))))....------.((((.....)---)))...))))))))))))))) ( -29.00) >DroSec_CAF1 106096 88 + 1 CAUAUAUAACGCACAUGGCCAU----ACAGUGCC--------GCCUCCAACCUGAUUUUCCGGGGAAA------CUGGUACUGGA---CCAACUGGUGGUACUGACGGU .................(((..----.(((((((--------(((.....((((......))))....------.((((.....)---)))...))))))))))..))) ( -28.10) >DroSim_CAF1 109425 88 + 1 CAUAUAUAACGCACAUGGCCAU----AUAGUGCC--------GCCUCCAACCUGAUUUUCCGGGGAAA------CUGGUACUGGA---CCAACUGGUGGUACUGAUGGU .................(((((----.(((((((--------(((.....((((......))))....------.((((.....)---)))...))))))))))))))) ( -30.00) >DroEre_CAF1 109644 97 + 1 CAUAUAUAACGCACAUGGCCAU----ACAGCAGC--------ACCUCCAACCUGAUUUUCCGGGGAAACUGGCACUGGUACUGGUACUCGUACUGGACCAACUGGUGCU ..........((...((.....----.))))(((--------(((.(((.((((......)))).....)))...((((.(..(((....)))..)))))...)))))) ( -25.70) >DroYak_CAF1 109728 98 + 1 CAUAUAUAACGCACAUGGCCAU----ACAGUGCCACCGUACCAGCUCCAACCUGAUUUUCCGGGGGAA----AACUGGUACUGGA---CCGACUGGUCCAACUGGUGGU ..........((((.((.....----.))))))(((((((((((.(((..((((......))))))).----..)))))))((((---((....))))))...)))).. ( -38.80) >consensus CAUAUAUAACGCACAUGGCCAU____ACAGUGCC________ACCUCCAACCUGAUUUUCCGGGGAAA______CUGGUACUGGA___CCAACUGGUGGUACUGAUGGU .................(((((.....(((((((................((((......))))..........(..((..(((....)))))..).)))))))))))) (-14.10 = -15.18 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:58 2006