Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,526,093 – 2,526,191 |
Length | 98 |
Max. P | 0.998215 |
Location | 2,526,093 – 2,526,191 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 72.40 |
Mean single sequence MFE | -22.90 |
Consensus MFE | -7.50 |
Energy contribution | -9.14 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.08 |
Mean z-score | -2.67 |
Structure conservation index | 0.33 |
SVM decision value | 3.04 |
SVM RNA-class probability | 0.998215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2526093 98 - 22407834 AAAAAAAAAUUAUUUUCUCAGCUUUAGCCUCCGGAAACACCCAUUCCACACAUUCACCCAACUAUGGCCUAAUGAAAAUUAGUUGGGCUGGAAAAGCU ...................((((((.......((((.......)))).....((((((((((((...............)))))))).)))))))))) ( -21.36) >DroSim_CAF1 109017 82 - 1 ----------------CCCAGCUUUAGGCUGCUGAAACUCCCAUUCCAUACAUUCACCAAACUAUGGCCUAAUGAAAAUUAGUUGGGCUGGAAAAGCU ----------------.((((((((((....)))))....(((..(((((............))))).(((((....))))).))))))))....... ( -18.50) >DroEre_CAF1 109231 95 - 1 ---AAAACACUCUUUUCUCAGCUUUAGGCUGCUGAAACUCCCAUUCCGCACAUUGGCCCAACUAAGGCCUAAUGAAAAUUAGUUGGGCUGCAAAAACU ---..............(((((........)))))............(((.....((((((((((.............)))))))))))))....... ( -23.62) >DroYak_CAF1 109316 95 - 1 ---AAAACACGGUUUUCUCAGCUUUAGGCUGCUGAAACUCCCAUUCCACACAUGCCCAAAACUAAGACCUAAUGGAAAUUAGUUGGGCUGGAAAAGCC ---.......(((((..(((((........)))))........(((((.....(((((..(((((..((....))...)))))))))))))))))))) ( -27.10) >DroAna_CAF1 131417 87 - 1 ---AUAAAAG--UUUUUUCACGAUUA-UCUGAGGAAACUU-----ACACCCUUGGUCUCAACUUUGUCAUAAUGAGAAUGAGUUGGGCCGGAAAAACC ---......(--(((((((.......-..((((....)))-----).......((((.((((((..((.......))..)))))))))))))))))). ( -23.90) >consensus ___AAAAAAC__UUUUCUCAGCUUUAGGCUGCUGAAACUCCCAUUCCACACAUUCACCCAACUAUGGCCUAAUGAAAAUUAGUUGGGCUGGAAAAGCU .................(((((........)))))..............................((((((((........))))))))......... ( -7.50 = -9.14 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:57 2006