Locus 885

Sequence ID 2L_DroMel_CAF1
Location 2,525,949 – 2,526,045
Length 96
Max. P 0.623874
window1432

overview

Window 2

Location 2,525,949 – 2,526,045
Length 96
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -27.63
Consensus MFE -17.03
Energy contribution -16.78
Covariance contribution -0.24
Combinations/Pair 1.29
Mean z-score -1.61
Structure conservation index 0.62
SVM decision value 0.18
SVM RNA-class probability 0.623874
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2525949 96 - 22407834
GUGAAACCAUCCCU--------------UGGAAUGACAGUAGAUUAGUUAACCUGCUGAAGGUGGGCUAAUUGCAAUGGCUGGCAUAUAGAGUCAUU-----UGUACUUUAUUGA
......(((.....--------------))).(((.((((.(((((((..((((.....))))..)))))))......)))).)))((((((((...-----.).)))))))... ( -23.70)
>DroSec_CAF1 105623 96 - 1
GUGAAACCAUCCCU--------------UGGAAUGACAGUAGAUUAGUUAACCUGCUGAAGGUGGGCUAAUUGCAAUGGCUGGCAUAUAGAGUCAUU-----UGUACUUUAUUGA
......(((.....--------------))).(((.((((.(((((((..((((.....))))..)))))))......)))).)))((((((((...-----.).)))))))... ( -23.70)
>DroSim_CAF1 108859 110 - 1
GUGAAACCAUCCCAGGGGAUGGUUUCCAGGGAAUGACAGUAGAUUAGUUAACCUGCUGAAGGUGGGCUAAUUGCAAUGGCUGGCAUAUAGAGUCAUU-----UGUACUUUAUUGA
(.((((((((((....))))))))))).(.(((((((....(((((((..((((.....))))..)))))))((........)).......))))))-----).).......... ( -38.60)
>DroEre_CAF1 109089 94 - 1
GUGAAACCAUCCCU--------------UGGAAUGACAGUAGAUUAGUUAACCUGCUGAAGGUGGGCUAAUUGCAUUGGCUGGAA--UAGAGCCAUU-----UGUACUUCAUUGA
......(((.....--------------)))(((((.(((.(((((((..((((.....))))..)))))))(((.(((((....--...)))))..-----))))))))))).. ( -27.20)
>DroYak_CAF1 109174 94 - 1
GUACCUCCAUCCCU--------------UGGAAUGACAGUGGAUUAGUUAACCUGCUGAAGGUGGGCUAAUUGCAAUGGCUGGAA--UAGAGUCAUU-----GGUACUUUAUUGA
(((((((((.....--------------))))......(..(.(((((..((((.....))))..))))))..)(((((((....--...)))))))-----)))))........ ( -28.50)
>DroAna_CAF1 131274 95 - 1
GUGAUUCCA----U--------------UGGGAUGACAGUGGAUUAGUAUACCGCCUAAAAGUUUCCUAAUUGCUGGGGCUCGAA--UUAAGGCAUGCGGAGGGCAGUUUAUUGA
.....((((----(--------------((......)))))))((((((.((.((((........((((.....))))(((....--....))).......)))).)).)))))) ( -24.10)
>consensus
GUGAAACCAUCCCU______________UGGAAUGACAGUAGAUUAGUUAACCUGCUGAAGGUGGGCUAAUUGCAAUGGCUGGAA__UAGAGUCAUU_____UGUACUUUAUUGA
...............................(((((.((((((((((((.((((.....)))).))))))))..(((((((.........))))))).......))))))))).. (-17.03 = -16.78 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:56 2006