Locus 883

Sequence ID 2L_DroMel_CAF1
Location 2,520,390 – 2,520,480
Length 90
Max. P 0.549308
window1430

overview

Window 0

Location 2,520,390 – 2,520,480
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 92.81
Mean single sequence MFE -22.87
Consensus MFE -20.44
Energy contribution -20.38
Covariance contribution -0.05
Combinations/Pair 1.14
Mean z-score -1.18
Structure conservation index 0.89
SVM decision value 0.03
SVM RNA-class probability 0.549308
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2520390 90 - 22407834
CUUGGGCAAAUCCUUCGGCCAGGACCUCGGCAUGCACAUGAUGUCCACAUGGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
.......(((((.((((((((((((.(((.........))).))))...)))))).)).)))))......((((((((....)))))))) ( -24.40)
>DroSec_CAF1 100114 90 - 1
CUUGGGCAAAUCCUUCGGCCAAGACCUCGGCAUGCACAUGAUGUCCACAUGGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
.......(((((.((((((((.(((.(((.........))).)))....)))))).)).)))))......((((((((....)))))))) ( -20.80)
>DroSim_CAF1 103320 90 - 1
CUUGGGCAAAUCCUUCGGCCAGGACCUCGGCAUGCACAUGAUGUCCACAUGGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
.......(((((.((((((((((((.(((.........))).))))...)))))).)).)))))......((((((((....)))))))) ( -24.40)
>DroEre_CAF1 103546 90 - 1
CCUGGCCAAAUCCUUUGGCCAGGACCUCGGCAUGCACAUGAUGUCCACAUAGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
(((((((((.....)))))))))....(((((((.((.....))...))).))))...............((((((((....)))))))) ( -26.70)
>DroYak_CAF1 103639 90 - 1
CUGGGCCAAAUCCUUUGGCCAGGACCUCGGCAUGCACAUGAUGUCCACAUGGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
.......(((((.((((((((((((.(((.........))).))))...)))))).)).)))))......((((((((....)))))))) ( -22.30)
>DroAna_CAF1 123562 87 - 1
--GAGCUAAGUCCUUCGCCUCGGGCGUCGGCAUGCACAUGAUGUCCACA-AGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
--....((((((.((((.((.((((((((.........))))))))...-)).)).)).)))))).....((((((((....)))))))) ( -18.60)
>consensus
CUUGGCCAAAUCCUUCGGCCAGGACCUCGGCAUGCACAUGAUGUCCACAUGGCCGCAAAGAUUUAUUUACAAUUGUGUUGAGACAUAAUU
.......(((((.((((((((((((.(((.........))).))))...)))))).)).)))))......((((((((....)))))))) (-20.44 = -20.38 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:54 2006