Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,510,765 – 2,510,855 |
Length | 90 |
Max. P | 0.520050 |
Location | 2,510,765 – 2,510,855 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -21.45 |
Energy contribution | -21.12 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.44 |
Structure conservation index | 0.79 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2510765 90 - 22407834 ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCACCGCCG------------------------AAGCUGAGGCUGACA .((((((((((((((((((((..(((((.....((.......))...)))))...))))))))....))))))..------------------------.)))..)))...... ( -23.40) >DroSec_CAF1 90631 90 - 1 ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCACGGCCA------------------------AAGCUGAGGCUGACA ....((((.((((((((((((..(((((.....((.......))...)))))...)))))))).)))).))))..------------------------.(((....))).... ( -25.80) >DroEre_CAF1 93869 89 - 1 ACCUGCUGCGGUGACAUUUUACGGCUU-UUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCAUCGCCG------------------------AGGCUGAGGCUGACA ....(((.(((((((((((((..((((-(....((.......))...)))))...)))))))).))))...((..------------------------..)).).)))..... ( -23.00) >DroYak_CAF1 93802 114 - 1 ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCGCCGCCGAAGCUGAUGCUGAUGCUGAUGCUGAGGCUGAGGCUGACA ....(((((((((((((((((..(((((.....((.......))...)))))...)))))))).)))))).(((..(((....((....))....)))..)))...)))..... ( -37.30) >DroAna_CAF1 111915 91 - 1 ACCUGCUGUGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCGCCGCCU-----------------------AAAGCUGAGGCUGACA ....((.((((((((((((((..(((((.....((.......))...)))))...)))))))).)))))).))..-----------------------..(((....))).... ( -25.40) >DroPer_CAF1 109543 112 - 1 ACCUGCUGGGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAAGCAUUUAAAAUGUGCACCACCGCCA--CCAAAAGCUGAAGCCGAAGCCGAAGCCGAGGCUGACA ..(.(((((((((((((((((..(((((.....((.......))...)))))...)))))))).)))).))((..--......))...))).).((((........)))).... ( -28.90) >consensus ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCACCGCCG________________________AAGCUGAGGCUGACA ....((.(.((((((((((((..(((((.....((.......))...)))))...)))))))).)))).).))...........................(((....))).... (-21.45 = -21.12 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:50 2006