Locus 880

Sequence ID 2L_DroMel_CAF1
Location 2,507,687 – 2,507,790
Length 103
Max. P 0.593998
window1425

overview

Window 5

Location 2,507,687 – 2,507,790
Length 103
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 94.74
Mean single sequence MFE -22.42
Consensus MFE -19.28
Energy contribution -19.72
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.86
SVM decision value 0.12
SVM RNA-class probability 0.593998
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2507687 103 - 22407834
GACAUA----CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCAAGCGAUUUGGGGCCAUAUCCAAAAUCGAUAUCG
......----.....(((((...(((((...)))))(......)...)))))..(((.............)))...(((((((((......))).))))))...... ( -18.82)
>DroSec_CAF1 87610 101 - 1
GGCAUA----CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCCAGCGAUUUGGGGCCAUAUCCA--AUCGAUAUCG
((((..----......))))...(((((...)))))((((((.....((((...................))))...((((.(((......))))--))))))))). ( -24.41)
>DroSim_CAF1 90404 103 - 1
GGCAUA----CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAUUGCAAGCGAUUUGGGGCCAUAUCCAAAAUCGAUAUCG
((((..----......))))...(((((...)))))((((((......(((((...............)))))....((((((((......))).))))))))))). ( -24.36)
>DroEre_CAF1 90900 103 - 1
GGCAUA----CAUAUUUGCCAGAUGCAGCAGCUGUAGAUAUUACAAAGGCAAUAGCAGAACUAAAAAGAAUGCAAGCGAUUUCGGGCCAUAUCCAAAAUCGAUAUCG
((((..----......))))...(((((...)))))((((((......((....(((...((....))..)))..))(((((.(((.....))).))))))))))). ( -21.80)
>DroYak_CAF1 90735 107 - 1
GGCAUACAUACAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCAAGCGAUUUAGGGGCAUAUCCAAAAUCGAUAUCG
((((............))))...(((((...)))))((((((......((....(((.............)))..))(((((.(((.....))).))))))))))). ( -22.72)
>consensus
GGCAUA____CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCAAGCGAUUUGGGGCCAUAUCCAAAAUCGAUAUCG
((((............))))...(((((...)))))((((((......((....(((.............)))..))(((((.(((.....))).))))))))))). (-19.28 = -19.72 +   0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:49 2006