Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,507,687 – 2,507,790 |
Length | 103 |
Max. P | 0.593998 |
Location | 2,507,687 – 2,507,790 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -19.28 |
Energy contribution | -19.72 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.28 |
Structure conservation index | 0.86 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2507687 103 - 22407834 GACAUA----CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCAAGCGAUUUGGGGCCAUAUCCAAAAUCGAUAUCG ......----.....(((((...(((((...)))))(......)...)))))..(((.............)))...(((((((((......))).))))))...... ( -18.82) >DroSec_CAF1 87610 101 - 1 GGCAUA----CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCCAGCGAUUUGGGGCCAUAUCCA--AUCGAUAUCG ((((..----......))))...(((((...)))))((((((.....((((...................))))...((((.(((......))))--))))))))). ( -24.41) >DroSim_CAF1 90404 103 - 1 GGCAUA----CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAUUGCAAGCGAUUUGGGGCCAUAUCCAAAAUCGAUAUCG ((((..----......))))...(((((...)))))((((((......(((((...............)))))....((((((((......))).))))))))))). ( -24.36) >DroEre_CAF1 90900 103 - 1 GGCAUA----CAUAUUUGCCAGAUGCAGCAGCUGUAGAUAUUACAAAGGCAAUAGCAGAACUAAAAAGAAUGCAAGCGAUUUCGGGCCAUAUCCAAAAUCGAUAUCG ((((..----......))))...(((((...)))))((((((......((....(((...((....))..)))..))(((((.(((.....))).))))))))))). ( -21.80) >DroYak_CAF1 90735 107 - 1 GGCAUACAUACAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCAAGCGAUUUAGGGGCAUAUCCAAAAUCGAUAUCG ((((............))))...(((((...)))))((((((......((....(((.............)))..))(((((.(((.....))).))))))))))). ( -22.72) >consensus GGCAUA____CAUAUUUGCCAGAUGCAGCAGCUGCAGAUAUUACAAAGGCAAUAGCAGAAAUAAAAAGAAUGCAAGCGAUUUGGGGCCAUAUCCAAAAUCGAUAUCG ((((............))))...(((((...)))))((((((......((....(((.............)))..))(((((.(((.....))).))))))))))). (-19.28 = -19.72 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:49 2006