Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 303,291 – 303,384 |
Length | 93 |
Max. P | 0.991754 |
Location | 303,291 – 303,384 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 94.73 |
Mean single sequence MFE | -17.28 |
Consensus MFE | -15.74 |
Energy contribution | -15.58 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.91 |
SVM decision value | 2.29 |
SVM RNA-class probability | 0.991754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 303291 93 + 22407834 ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGAAAAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA ..(((((.....))))).....(((((((......))))))).(((.((((.((((((((((.........)))))))))).))))...))). ( -17.10) >DroSec_CAF1 7511 92 + 1 ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGA-AAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA ..(((((.....)))))..(((((.((((.....(((((((....)))-))))(((((((((.........)))))))))..)))).))))). ( -16.60) >DroSim_CAF1 7913 92 + 1 ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGA-AAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA ..(((((.....)))))..(((((.((((.....(((((((....)))-))))(((((((((.........)))))))))..)))).))))). ( -16.60) >DroEre_CAF1 7882 93 + 1 AUAGCUUGCUAGAAGCUCUGUGUAGAGGAACGAAAUUUUCUAAUUGGAAGAGUAAUCUUAUUAACAAUUCGAGUAAGAUUAAUUUUAUAUAAA ..(((((.....))))).(((((((((........((((((....)))))).((((((((((.........)))))))))).))))))))).. ( -17.90) >DroYak_CAF1 8124 92 + 1 AAAGCUUGCUAGAAGCUCAGUGUAGAAGAACGAAAUUUUCUAAUUGGAAAACUAAUCUUAUUAACA-UACGAGUAAGAUUAAUUUUAUAUAAA ..(((((.....)))))((((.(((((((......))))))))))).((((.((((((((((....-....)))))))))).))))....... ( -18.20) >consensus ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGAAAAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA ..(((((.....))))).....(((((((......))))))).(((.((((.((((((((((.........)))))))))).))))...))). (-15.74 = -15.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:24 2006