Locus 874

Sequence ID 2L_DroMel_CAF1
Location 2,492,330 – 2,492,443
Length 113
Max. P 0.647154
window1416

overview

Window 6

Location 2,492,330 – 2,492,443
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.81
Mean single sequence MFE -29.54
Consensus MFE -18.18
Energy contribution -18.35
Covariance contribution 0.17
Combinations/Pair 1.33
Mean z-score -1.35
Structure conservation index 0.62
SVM decision value 0.24
SVM RNA-class probability 0.647154
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2492330 113 + 22407834
CGAUCGUAGAUAAGGAUCUUCCACACGGGCUCGGCAGCUAGGGCUUUCGGCUGCUGCGAGUUCAAAUUAAGCAUCUGCUUAAUGGCAUCUGCA-AUGAUUAAUAUGAAAAU---CCA---
.((((((((((..((.....))....(((((((.((((...(((.....))))))))))))))..(((((((....)))))))...)))))).-..))))...........---...--- ( -33.40)
>DroVir_CAF1 107451 110 + 1
CGGUCAUAUAUGAGAAUCUUCCACACGGGCUCCGCGGCCAUUGCCUUUGGCUGCUGCGAGUUUAAAUUAAGCAUUUGCUUAAUCGCAUCUG---UAAAC--GAAGGCAGAA--UUGA---
.((((...............((....))((...)))))).(((((((((..((((((((.......((((((....)))))))))))...)---))..)--))))))))..--....--- ( -31.71)
>DroGri_CAF1 106442 114 + 1
CGAUCGUAGAUGAGAAUCUUCCACACUGGCUCCGCUGCCAGGGCUUUUGGUUGCUGCGAAUUCAAAUUAAGCAUUUGCUUAAUUGCAUCUGA--AACAC--GAAAGCAGAA--AUAGAAA
.....(.((((....)))).)....(((((......))))).((((((((((..((((....).((((((((....))))))))))).....--))).)--))))))....--....... ( -29.40)
>DroWil_CAF1 104864 109 + 1
CGAUCGUAUAUCAGAAUCUUCCAUACCGGCUCAGCAGCUAAGGCCUUUGGCUGCUGAGAGUUCAGAUUUAGCAUUUGCUUAAUAGCAUCUACA-AG----AAAAAAAAAAA---CAU---
.....(((.....((((((.((.....))(((((((((((((...))))))))))))).....))))))......((((....))))..))).-..----...........---...--- ( -26.90)
>DroMoj_CAF1 112460 114 + 1
CGAUCGUAGAUGAGUAUCUUCCACACGGGUUCAGCGGCCAAGACUUUCGGUUGCUGCGAAUUUAAAUUAAGCAUUUGCUUAAUUGCAUCUGGG-AAAAC--GAAGACAGAAAAGUGA---
...((.((((((....((.(((....)))..((((((((.........)))))))).)).....((((((((....)))))))).)))))).)-)....--................--- ( -28.50)
>DroAna_CAF1 85297 114 + 1
CGAUCAUAUAUAAGGAUCUUCCACACAGGCUCAGCUGCCAAGGCUUUCGGCUGCUGUGAGUUUAAAUUAAGCAUUUGCUUAAUGGCAUCUGGAAACAAUUUGUAAAAUAGC---CCA---
........((((((....((((((((((...(((((((....))....)))))))))).((....(((((((....))))))).))...)))))....)))))).......---...--- ( -27.30)
>consensus
CGAUCGUAGAUGAGAAUCUUCCACACGGGCUCAGCAGCCAAGGCUUUCGGCUGCUGCGAGUUCAAAUUAAGCAUUUGCUUAAUGGCAUCUGCA_AAAAC__GAAAAAAAAA___CAA___
.((((.....................(((((((((((((.........)))))))..))))))..(((((((....))))))).).)))............................... (-18.18 = -18.35 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:41 2006