Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,488,876 – 2,488,982 |
Length | 106 |
Max. P | 0.931620 |
Location | 2,488,876 – 2,488,982 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.99 |
Mean single sequence MFE | -25.97 |
Consensus MFE | -22.68 |
Energy contribution | -23.35 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.09 |
Mean z-score | -1.97 |
Structure conservation index | 0.87 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931620 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2488876 106 - 22407834 AAUAAAAGUACAGGGGAAACGAAAAGUCGAACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG .............((((..(((....)))...)))).(((((...)))))........(((((((...(..((..(((..-......)))..))..)))))))).-.. ( -22.70) >DroSec_CAF1 68146 101 - 1 -----AAGUACAGGGGAAACGAGAAGUCGGACUCCCAACCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG -----........(((...((.....((((((((((.(((((...)))))........(((....)))))).))))))).-......)).)))............-.. ( -28.70) >DroSim_CAF1 71527 101 - 1 -----AAGUACAGGGGAAACGAGAAGUCGGACUCCCAACCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG -----........(((...((.....((((((((((.(((((...)))))........(((....)))))).))))))).-......)).)))............-.. ( -28.70) >DroEre_CAF1 71218 106 - 1 ACCAAAAGUACAGGGGAAACGAGAAGUCGGACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG .............(((...((.....((((((((((.(((((...)))))........(((....)))))).))))))).-......)).)))............-.. ( -29.00) >DroYak_CAF1 71153 106 - 1 CCCAAAAGUACAGGGGAAACGAGAAGUCGAACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG (((.........)))((..((.....(((.((((((.(((((...)))))........(((....)))))).))).))).-......))..))............-.. ( -24.50) >DroAna_CAF1 79820 99 - 1 -----AAAUACA----AAAAGAGAAGUCAGACUCCGAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCUGAAAAAGAUGCGGCUCAAACAAAUCAUAAAG -----.......----....(((...(((((((....(((((...))))).((((...(((....))))))))))))))...........)))............... ( -22.24) >consensus _____AAGUACAGGGGAAACGAGAAGUCGGACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA_AAGAUGCGGCUCAAACAAAUCAUA_AG .............(((...((.....((((((((((.(((((...)))))........(((....)))))).)))))))........)).)))............... (-22.68 = -23.35 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:40 2006