Locus 871

Sequence ID 2L_DroMel_CAF1
Location 2,482,968 – 2,483,058
Length 90
Max. P 0.628413
window1413

overview

Window 3

Location 2,482,968 – 2,483,058
Length 90
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 83.45
Mean single sequence MFE -12.98
Consensus MFE -12.52
Energy contribution -12.52
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score 0.01
Structure conservation index 0.96
SVM decision value 0.19
SVM RNA-class probability 0.628413
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2482968 90 - 22407834
CCAACCUCCAACCAAC----AACCAGCCCAUGGAGCCACAAUCACACAAUCGAACAAAACCCCCACGAUCACGACGGUGCGUCCUCUUCGGCGG
................----..((.(((...(((..(((..((.....((((.............))))...))..)))..))).....))))) ( -12.52)
>DroSec_CAF1 62158 90 - 1
CCAACCACCAGCCAAC----CACCAGCCCAUGGAGCCACAAUCACACAAUCGCACAAAACCCCCACGAUCACGACGGUGCGUCCUCUUCGGCGG
.......((.(((...----..(((.....))).................(((((.....................)))))........))))) ( -13.90)
>DroEre_CAF1 65611 78 - 1
----------------CAACAACCAGCCCAUGGAGCCACAAUCACACAAUCGCACAAAACCCCCACGAUCACGACGGUGCGUCCUCUUCGGCGG
----------------......((.(((...(((..(((..((.....((((.............))))...))..)))..))).....))))) ( -12.52)
>consensus
CCAACC_CCA_CCAAC____AACCAGCCCAUGGAGCCACAAUCACACAAUCGCACAAAACCCCCACGAUCACGACGGUGCGUCCUCUUCGGCGG
......................((.(((...(((..(((..((.....((((.............))))...))..)))..))).....))))) (-12.52 = -12.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:38 2006