| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,480,916 – 2,481,019 |
| Length | 103 |
| Max. P | 0.658529 |
| Location | 2,480,916 – 2,481,019 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.58 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -15.75 |
| Energy contribution | -15.33 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2480916 103 - 22407834 ----------U-----UCUUGCAGUGCAUU-UGGGCCAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGACAG-CGCAC ----------.-----.......((((...-.............(((((.....)))))...(((((((((......(((((.((((....))))))))))))))))))....)-))).. ( -23.60) >DroPse_CAF1 70669 104 - 1 ----------U-----UUUGUCAGUGCAUUUUAGGCGUACAUUUUGGCCUCUUUGGUUAUUAUUUAUGAAGCUAUUAGCCCAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAA-CACAC ----------.-----.......(((......((((..........))))..((((((.((((....(((((.........((((((....)))))).))))).))))))))))-))).. ( -19.40) >DroGri_CAF1 87499 104 - 1 ----------U-----UCUCACAGUGCAUU-UUGGCCAACAUUUUGACCGCUUUGGUUAUUAUUUAUGAAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUCUAUAAGGCCACACACUC ----------.-----......((((....-.(((((.......(((((.....)))))....(((((((((........(((((((....)))))))))))).)))))))))..)))). ( -25.80) >DroWil_CAF1 87808 103 - 1 ----------U-----UCUUUCAGUGUACU-UUGCUCAACAUUUUGACCUCUUUGGUUAUUAUUUAUGGAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAA-CACAA ----------.-----.......(((((((-..((((...((..(((((.....)))))..)).....))))....))).(((((((....)))))))((((.....))))..)-))).. ( -23.40) >DroMoj_CAF1 94451 104 - 1 ----------U-----UUUCUCAGUGUAUU-UGGGCCAACAUUUUGACCUCUUUGGUUAUUAUUUAUGGAGCUAUUAGUAAACUGUGUGAACACAUUUGCUUCUAUAAAAGCACACACAC ----------.-----.......((((...-.............(((((.....)))))...((((((((......((((((.((((....)))))))))))))))))).))))...... ( -22.90) >DroAna_CAF1 69877 117 - 1 UAAUAUCACCAUCGCAUUUGUCAGUGCACU-UUGGCCAACAU-UUGGCCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAG-GACAC .............((((......))))...-..(((((....-.)))))..(((((((.((((....(((((........(((((((....)))))))))))).))))))))))-).... ( -29.50) >consensus __________U_____UCUCUCAGUGCAUU_UUGGCCAACAUUUUGACCUCUUUGGUUAUUAUUUAUGAAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAA_CACAC .......................(((..................(((((.....)))))...((((((((((........(((((((....)))))))))))).)))))......))).. (-15.75 = -15.33 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:37 2006