Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 303,028 – 303,123 |
Length | 95 |
Max. P | 0.907507 |
Location | 303,028 – 303,123 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 83.87 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -22.48 |
Energy contribution | -23.20 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.83 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907507 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 303028 95 - 22407834 CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCUAUUGUAACACUAGGUAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUAUCGUA----------- ..(((((......(((((....)))))............((((..(((((((..(....)..)))))))..)))).......-------------.....)))))...----------- ( -25.60) >DroSec_CAF1 7260 95 - 1 CUGAUGUACACAAUCGGCGAGGGCCGAAAUAAUAGCAUUGCGAUUGUAACACUAUGUAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUAUCGUA----------- (((((.......))))).((((((((((.(((((((.(((((...(.....)..))))).)).))))).))))))))))...-------------.............----------- ( -26.60) >DroSim_CAF1 7661 95 - 1 CUGAUGUACACAAUCGGCGAGGGCCGAAAUAAUAGCAUUGCGAUUGUAACACUAUGUAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUAUCGUA----------- (((((.......))))).((((((((((.(((((((.(((((...(.....)..))))).)).))))).))))))))))...-------------.............----------- ( -26.60) >DroEre_CAF1 7605 106 - 1 CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCCAUUGUAACACUUAGCAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUUUCGAAACUCGAGUAGC ..(((((......(((((....))))).......)))))((((..(((((((..........)))))))..)))).....((-------------((((.............)))))). ( -29.54) >DroYak_CAF1 7835 119 - 1 CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCCAUUGUAACACUUAGUAACGCGUGUUACUUCGGCUCUCAUUCUCAAUUCUUAAUUCUCGAUAUCGAAACUUGAGUCGC ..(((((......(((((....))))).......)))))(((...(((((((..........)))))))...)))..............(((((.(.(((....))).).))))).... ( -26.52) >consensus CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCCAUUGUAACACUAAGUAACGCGUGUUACUUUGGCUCUCAUU_____________ACUCAAUAUCGUA___________ ..(((((......(((((....)))))............((((..(((((((..........)))))))..)))).........................))))).............. (-22.48 = -23.20 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:22 2006