Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,475,982 – 2,476,072 |
Length | 90 |
Max. P | 0.623881 |
Location | 2,475,982 – 2,476,072 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -13.89 |
Consensus MFE | -11.10 |
Energy contribution | -11.21 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.14 |
Structure conservation index | 0.80 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2475982 90 + 22407834 GCGUAAACAAGCGUCUCCAAUUGCC--CCAUAA--AAACUCAAUUGCAGACAAAUUGUCGCCAAAAA-A----AGCUGUUUAUCUUCGAA----CACAACAAG ..(((((((.((((((.((((((..--......--.....)))))).))))...(((....)))...-.----.))))))))).......----......... ( -15.12) >DroPse_CAF1 64693 89 + 1 GCGUAAACAGGCGUCUCCAAUUUCCCCCCAUAAAAAAACUCAAUUGCAGACAAAUUGUCGCCAAA-AAAAAAGAGCUACAUAUUU-------------ACUCG (((...((((..((((.(((((...................))))).))))...)))))))....-......(((..........-------------.))). ( -10.31) >DroSec_CAF1 55246 89 + 1 GCGUAAACAAGCGUCUCCAAUUGCC--CCAUAA--AAACUCAAUUGCAGACAAAUUGUCGCCAAA-A-A----AGCUGUUUAUCUUCGAA----CACAACAAG ..(((((((.((((((.((((((..--......--.....)))))).))))...(((....))).-.-.----.))))))))).......----......... ( -15.12) >DroSim_CAF1 58251 89 + 1 GCGUAAACAAGCGUCUCCAAUUGCC--CCAUAA--AAACUCAAUUGCAGACAAAUUGUCGCCAAA-A-A----AGCUGUUUAUCUUCGAA----CACAACAAG ..(((((((.((((((.((((((..--......--.....)))))).))))...(((....))).-.-.----.))))))))).......----......... ( -15.12) >DroAna_CAF1 65346 92 + 1 GCGUAAACAAGCGUCUCCAAUUGCC--CCAUUA--AAACCCAAUUGCAGACAAUUUGUCGCCGAA-A-A----AUAAGUCUG-CUCCGCAGAAGCCAAACACG (((...(((((.((((.((((((..--......--.....)))))).))))..))))))))....-.-.----.....((((-(...)))))........... ( -17.02) >DroPer_CAF1 62515 86 + 1 GCGUAAACAGGCGUCUCCAAUUUCCC-CCAUAAA-AAACUCAAUUGCAGACAAAUUGUCGCCAAA-A-AAAAGAGCUACAUAUUU-------------ACUCG (.(((((.....((((.(((((....-.......-......))))).))))....(((.(((...-.-....).)).)))..)))-------------)).). ( -10.63) >consensus GCGUAAACAAGCGUCUCCAAUUGCC__CCAUAA__AAACUCAAUUGCAGACAAAUUGUCGCCAAA_A_A____AGCUGUUUAUCUUCGAA____CACAACAAG (((...((((..((((.((((((.................)))))).))))...))))))).......................................... (-11.10 = -11.21 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:33 2006