Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,472,460 – 2,472,550 |
Length | 90 |
Max. P | 0.968112 |
Location | 2,472,460 – 2,472,550 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 96.44 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -30.12 |
Energy contribution | -29.92 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.53 |
Structure conservation index | 0.95 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2472460 90 - 22407834 CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCCGCUGAAGUGGCUUAAUUAACUGCAGGCGGAGAA .....(((((.(((.(((((....)))))...)))...((((((....))))..(((((....)))))..........)))))))..... ( -31.50) >DroSec_CAF1 51692 90 - 1 CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA .....(((((..(((.(..(((.((((...((((.(.((.((((....)))).)).)))))...))))..)))..).))))))))..... ( -33.20) >DroSim_CAF1 54220 90 - 1 CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA .....(((((..(((.(..(((.((((...((((.(.((.((((....)))).)).)))))...))))..)))..).))))))))..... ( -33.20) >DroEre_CAF1 54002 90 - 1 CGAAAUGCCUUUGCAUUCGGUUCGCAAAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA ........((((((...(((((....((((((.((..(((((((....))))..)))..))...))))))....)))))...)))))).. ( -30.60) >DroYak_CAF1 54223 90 - 1 CGAAAUGCCUUUGCAUUCGGUUCGCAAAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA ........((((((...(((((....((((((.((..(((((((....))))..)))..))...))))))....)))))...)))))).. ( -30.60) >consensus CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA ........((((((...(((((....((((((.((..(((((((....))))..)))..))...))))))....)))))...)))))).. (-30.12 = -29.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:32 2006