Locus 867

Sequence ID 2L_DroMel_CAF1
Location 2,472,460 – 2,472,550
Length 90
Max. P 0.968112
window1406

overview

Window 6

Location 2,472,460 – 2,472,550
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 96.44
Mean single sequence MFE -31.82
Consensus MFE -30.12
Energy contribution -29.92
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.53
Structure conservation index 0.95
SVM decision value 1.62
SVM RNA-class probability 0.968112
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2472460 90 - 22407834
CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCCGCUGAAGUGGCUUAAUUAACUGCAGGCGGAGAA
.....(((((.(((.(((((....)))))...)))...((((((....))))..(((((....)))))..........)))))))..... ( -31.50)
>DroSec_CAF1 51692 90 - 1
CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA
.....(((((..(((.(..(((.((((...((((.(.((.((((....)))).)).)))))...))))..)))..).))))))))..... ( -33.20)
>DroSim_CAF1 54220 90 - 1
CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA
.....(((((..(((.(..(((.((((...((((.(.((.((((....)))).)).)))))...))))..)))..).))))))))..... ( -33.20)
>DroEre_CAF1 54002 90 - 1
CGAAAUGCCUUUGCAUUCGGUUCGCAAAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA
........((((((...(((((....((((((.((..(((((((....))))..)))..))...))))))....)))))...)))))).. ( -30.60)
>DroYak_CAF1 54223 90 - 1
CGAAAUGCCUUUGCAUUCGGUUCGCAAAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA
........((((((...(((((....((((((.((..(((((((....))))..)))..))...))))))....)))))...)))))).. ( -30.60)
>consensus
CGAAACGCCUUUGCAUUCGGUUUGCCGAGCCGGCACACGCUGCGUAUACGCAAUGCGGCUGAAGCGGCUUAAUUAACUGCAGGCGGAGAA
........((((((...(((((....((((((.((..(((((((....))))..)))..))...))))))....)))))...)))))).. (-30.12 = -29.92 +  -0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:32 2006