Locus 866

Sequence ID 2L_DroMel_CAF1
Location 2,469,322 – 2,469,426
Length 104
Max. P 0.880795
window1405

overview

Window 5

Location 2,469,322 – 2,469,426
Length 104
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 87.55
Mean single sequence MFE -33.35
Consensus MFE -28.00
Energy contribution -28.00
Covariance contribution 0.00
Combinations/Pair 1.11
Mean z-score -2.33
Structure conservation index 0.84
SVM decision value 0.91
SVM RNA-class probability 0.880795
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2469322 104 - 22407834
CGACACACGCUUGGCUACUUUUUGGCGCUCCAUGGGGCGCAAGAAAGA-----AGAGAUACCUCCAAAGGCUACAAUGCCGCCAGCGUUGAAGG-CA-AUGAAUAGUGAAC
...((((((((.(((..((((((.((((((....)))))).)))))).-----.(((....)))....(((......)))))))))))((....-))-.......)))... ( -36.00)
>DroPse_CAF1 55981 110 - 1
CGACACACGCUUGGCUACUUUUUGGCACGCCAUGGGGUGCAAAAAAAAAAAAAAAAAAAGUUCCCAAAGGCUUAAAUGCCGCCAACGUUGAUGGCCA-AUGAAUAGUGAAC
.....(((((((((..(((((((.((((.(....).))))..............)))))))..)))).(((......)))))...(((((.....))-)))....)))... ( -28.96)
>DroSim_CAF1 50101 104 - 1
CGACACACGCUUGGCUACUUUUUGGCGCUCCAUGGGGCGCAAGAAAGA-----AGAGAUACCUCCAAAGGCUACAAUGCCGCCAGCGUUGGAGG-CA-AUGAAUAGUGAAC
(..((.(((((.(((..((((((.((((((....)))))).)))))).-----.(((....)))....(((......)))))))))))))..).-..-............. ( -36.80)
>DroEre_CAF1 50694 104 - 1
CGACACACGCUUGGCUACUUUUUGGCGCUCCAUGGGGCGCAAGAAAGA-----AGAGAUACCUCCAAAGGCUACAAAGCCGCCAUCGUCGAAGG-CA-AUGAAUAGUGAAC
...((((((..((((..((((((.((((((....)))))).)))))).-----.(((....)))....((((....)))))))).)))(....)-..-.......)))... ( -33.30)
>DroYak_CAF1 50872 105 - 1
CGACACACGCUUGGCUACUUUUUGGCGCUCCAUGGGGCGCAAGAAAGA-----AGAGAUACCUCCAAAGGCUACAAUGCCGCCAGCGUUGAAGG-CAAAUGAAUAGUGAAC
...((((((((.(((..((((((.((((((....)))))).)))))).-----.(((....)))....(((......)))))))))))((....-))........)))... ( -36.00)
>DroPer_CAF1 54487 109 - 1
CGACACACGCUUGGCUACUUUUUGGCACGCCAUGGGGUGCAAAAAAAUA-AAAAAAAAAGUUCCCAAAGGCUUAAAUGCCGCCAACGUUGAUGGCCA-AUGAAUAGUGAAC
.....(((((((((..(((((((.((((.(....).)))).........-....)))))))..)))).(((......)))))...(((((.....))-)))....)))... ( -29.04)
>consensus
CGACACACGCUUGGCUACUUUUUGGCGCUCCAUGGGGCGCAAGAAAGA_____AGAGAUACCUCCAAAGGCUACAAUGCCGCCAGCGUUGAAGG_CA_AUGAAUAGUGAAC
...((((((.(((((..((((((.((((((....)))))).)))))).....................(((......))))))))))).......(....)....)))... (-28.00 = -28.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:31 2006