Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,459,296 – 2,459,392 |
Length | 96 |
Max. P | 0.890403 |
Location | 2,459,296 – 2,459,392 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 96.53 |
Mean single sequence MFE | -11.60 |
Consensus MFE | -11.60 |
Energy contribution | -11.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 1.00 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2459296 96 + 22407834 GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACCCCCAUUAGCAA-ACACACAACC ..(((((((((((..........(((((((...........)))))))..))))))))))).........................-.......... ( -11.60) >DroSec_CAF1 38457 94 + 1 GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACC--CAUAAGCAA-ACACACAACC ..(((((((((((..........(((((((...........)))))))..)))))))))))..............--.........-.......... ( -11.60) >DroSim_CAF1 40033 94 + 1 GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACC--CAUAAGCAAAACACACAAC- ..(((((((((((..........(((((((...........)))))))..)))))))))))..............--...................- ( -11.60) >consensus GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACC__CAUAAGCAA_ACACACAACC ..(((((((((((..........(((((((...........)))))))..))))))))))).................................... (-11.60 = -11.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:29 2006