Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,456,878 – 2,456,981 |
Length | 103 |
Max. P | 0.691084 |
Location | 2,456,878 – 2,456,981 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.20 |
Mean single sequence MFE | -37.88 |
Consensus MFE | -30.49 |
Energy contribution | -31.33 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.06 |
Mean z-score | -2.09 |
Structure conservation index | 0.80 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2456878 103 + 22407834 UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--U-UGUUGG .......(((((((....((((((((((------....))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)-...... ( -38.50) >DroSec_CAF1 36041 103 + 1 UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUAACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--U-UGUUGG ........((((((....((((((((((------....))))).))))).))))))((((((.(((.....((((((((....))).)))))..))).))))--)-)..... ( -39.40) >DroSim_CAF1 37616 103 + 1 UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--U-UGUUGG .......(((((((....((((((((((------....))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)-...... ( -38.50) >DroEre_CAF1 38136 103 + 1 UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGGCUUUAGCCUGUGGCAUCUGUGCCG--U-UGUUGG .......(((((((....((((((((((------....))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)-...... ( -41.20) >DroYak_CAF1 37837 110 + 1 UGUCUAAAGCCAAGUGUCUAAGCCGACUCGAGCCGGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUUUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--UUUGUUGG .......(((((((....((((((((((((......))))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)....... ( -44.10) >DroAna_CAF1 44709 92 + 1 AACCUAAAGCCAAGUGUCUAAGCCGCAU---GUCUUCGAGUCGAGUUUGCCUUGGUCACGGCUCAGUUAGGUCC----------------GCAUCUGUGCCGAAU-UGUCGG .((((((((((..(((.(((((..(((.---..(((......)))..)))))))).)))))))...)))))).(----------------((....)))((((..-..)))) ( -25.60) >consensus UGUCUAAAGCCAAGUGUCUAAGCCGACU______GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG__U_UGUUGG .......(((((((....((((((((((..........))))).))))).))))))).((((.(((.....((((((((....))).)))))..))).)))).......... (-30.49 = -31.33 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:27 2006