Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,450,444 – 2,450,562 |
Length | 118 |
Max. P | 0.686048 |
Location | 2,450,444 – 2,450,562 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 87.88 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -19.22 |
Energy contribution | -19.94 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.15 |
Mean z-score | -1.84 |
Structure conservation index | 0.73 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2450444 118 + 22407834 UAUAUAAUAAAACUGUUGUGUUUAAUAGUCAGAAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCUCCA .((((((((....))))))))..(((((((....((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).)))))))))))))))..... ( -29.60) >DroSec_CAF1 29626 118 + 1 UUUAAAAUAAAACUAUUGUGUUUAUUAGUCACCAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCCCCA .........((((......))))..(((((....((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).)))))))))))))....... ( -26.10) >DroSim_CAF1 31000 118 + 1 UAUAAAAUAAAACUAUUGUGUUUAUUAGUCACAAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCCCCA .....(((((.....(((((.........)))))((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).))))))))..)))))..... ( -27.00) >DroEre_CAF1 31715 118 + 1 UAAAUAAUACAACUAUUGUGUACGUUUGCCAUUCGCUUGCCUAAAAGGAAGCACUUGUUCAAAACUUUAAUCGAGAGCAAGACGCAGUGCUUUUAUUAAGGGAAGUGAUUGUUCCCCG ......(((((.....)))))........((.((((((.(((.((..((((((((((((.....((((.....))))...)))).))))))))..)).))).)))))).))....... ( -29.10) >DroYak_CAF1 30376 118 + 1 UAUAUAAUAAAACUCUUGUGUUCAUUAGUCACAAGCUCGCUUAAAAGGCAGCACUUGUUCAACACUUAAAUCGAAAGCAAAACGAAAUUCUGUUAUUAAGGGAAGUGAUUGUUCCACA ................((((.....(((((((..(((.(((.....)))))).....(((....(((((..(....)...((((......)))).))))).))))))))))...)))) ( -20.10) >consensus UAUAUAAUAAAACUAUUGUGUUUAUUAGUCACAAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCCCCA ..................................((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).))))))))............ (-19.22 = -19.94 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:24 2006