Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 301,051 – 301,153 |
Length | 102 |
Max. P | 0.604650 |
Location | 301,051 – 301,153 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.15 |
Mean single sequence MFE | -27.16 |
Consensus MFE | -17.72 |
Energy contribution | -17.03 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.17 |
Mean z-score | -1.79 |
Structure conservation index | 0.65 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 301051 102 - 22407834 CUAUCUUUAGCGAGGUGCUAACCUUAUCUAGAGGCCUC--------CUUGCCUCCUACCAGUUGG-------CACUUCCCCAAGCUGUCACUUGUGCUGAAACACUCUGGGUGAUUC .....(((((((((((((((((........(((((...--------...)))))......)))))-------))))))..((((......)))).)))))).(((.....))).... ( -32.84) >DroSim_CAF1 5695 102 - 1 CUAUCUUUAGCGAGGUGCUAACCUUAUCUAGAGGCCUC--------CUUGCCUCCUUCCACUUGG-------CACUUCCCCAAGCUGUCAUUUGUGCUGAAACACUCUGGGUGAUAC .....((((((((((((((((.........(((((...--------...))))).......))))-------)))))).....((........)))))))).(((.....))).... ( -27.49) >DroEre_CAF1 5492 102 - 1 CUAUCUUUAGCGGGGCGCUAACCUUAUCUAGAGGCCUC--------CUUGCCUCCUCCCACUUGC-------CACUUCCCCAAGCUGUCACCCGCGCUGAAACACUCUAGGUGAUAC .....((((((((((.(.............(((((...--------...)))))....((((((.-------........)))).)).).))).))))))).(((.....))).... ( -24.40) >DroYak_CAF1 5660 117 - 1 CUAUCUUUAGCGAGGCGCUAACCUUAUCUAGAGGCCUCCCUGCCUCCUUGCCUCCGCCCACUUGCCGCUUCCCACUUCCCCAAGCUGUCACUCGCGCCGAAACACUCUAGGUGAUAC .(((((..((.(.(((((............(((((......))))).................((.((((...........)))).)).....)))))....).))..))))).... ( -23.90) >consensus CUAUCUUUAGCGAGGCGCUAACCUUAUCUAGAGGCCUC________CUUGCCUCCUCCCACUUGC_______CACUUCCCCAAGCUGUCACUCGCGCUGAAACACUCUAGGUGAUAC .(((((..((.(.(((((............(((((..............)))))....((((((................)))).))......)))))....).))..))))).... (-17.72 = -17.03 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:21 2006