Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,444,770 – 2,444,867 |
Length | 97 |
Max. P | 0.989043 |
Location | 2,444,770 – 2,444,867 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -22.69 |
Consensus MFE | -14.81 |
Energy contribution | -14.53 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.55 |
Structure conservation index | 0.65 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2444770 97 + 22407834 GCGGUGCAAAAACCGCGCGAACAAACAAACAAAACUGCAUUUGCAUUUGCAAAUUCGCUCAAAUUGAAUUUCGUUUUGCGGCUGCACUUAUGCAUUU (((((......)))))...................(((((.((((.(((((((..((.((.....))....)).))))))).))))...)))))... ( -24.60) >DroSec_CAF1 24016 97 + 1 GCGGUGCAAAAACCGCGCGAACAAACAAACAAAACUCCAUUUGCAUUUGCAAAUUCGCUCAAAUUGAAUUUCGUUUUUUGGCUGCACUUAUGCAUUU (((((......)))))(((..((((.((((.(((.((.(((((.....((......)).))))).)).))).))))))))..)))............ ( -22.30) >DroSim_CAF1 24413 91 + 1 GCGGUGCAAAAACCGCGCGAACAAACAAACAAAACU------GCAUUUGCAAAUUCGCUCAAAUUGAAUUUCGUUUUGUGGCUGCACUUAUGCAUUU (((((......)))))............(((((((.------((....))(((((((.......))))))).)))))))...((((....))))... ( -21.00) >DroEre_CAF1 25849 86 + 1 GCAGUGCAAAAACCGCGCGAACAAACAAACAAAACUGCAUUUGCA-------GUUCGCUCAAAUUGAAUUUCAUUUUGCGGUUGCACUUA----UUU ..((((((...(((((((((.............(((((....)))-------))))))..(((.((.....)).))))))))))))))..----... ( -25.21) >DroYak_CAF1 24440 86 + 1 GCAGUGCAAAAACCGCGCGAACAAACAAACAAAACUGCAUUUGCA-------AUUCGCUCAAAUUGAAUUUCAUUCUGCGGUUGCACUUA----UUU ..((((((...((((((((((..............(((....)))-------.))))).......((((...)))).)))))))))))..----... ( -20.36) >consensus GCGGUGCAAAAACCGCGCGAACAAACAAACAAAACUGCAUUUGCAUUUGCAAAUUCGCUCAAAUUGAAUUUCGUUUUGCGGCUGCACUUAUGCAUUU ..((((((....(((((((((................................)))))((.....))..........)))).))))))......... (-14.81 = -14.53 + -0.28)
Location | 2,444,770 – 2,444,867 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -21.08 |
Energy contribution | -21.64 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -3.05 |
Structure conservation index | 0.75 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2444770 97 - 22407834 AAAUGCAUAAGUGCAGCCGCAAAACGAAAUUCAAUUUGAGCGAAUUUGCAAAUGCAAAUGCAGUUUUGUUUGUUUGUUCGCGCGGUUUUUGCACCGC ..........((((((((((....((((......)))).((((((..((((..(((((......)))))))))..)))))))))))...)))))... ( -30.80) >DroSec_CAF1 24016 97 - 1 AAAUGCAUAAGUGCAGCCAAAAAACGAAAUUCAAUUUGAGCGAAUUUGCAAAUGCAAAUGGAGUUUUGUUUGUUUGUUCGCGCGGUUUUUGCACCGC ...((((....))))(((((((((((((((((.(((((.(((....))).....))))).))))))))))).))))...))(((((......))))) ( -26.00) >DroSim_CAF1 24413 91 - 1 AAAUGCAUAAGUGCAGCCACAAAACGAAAUUCAAUUUGAGCGAAUUUGCAAAUGC------AGUUUUGUUUGUUUGUUCGCGCGGUUUUUGCACCGC ..........((((((((.(....((((......)))).((((((..((((((..------......))))))..))))))).)))...)))))... ( -24.50) >DroEre_CAF1 25849 86 - 1 AAA----UAAGUGCAACCGCAAAAUGAAAUUCAAUUUGAGCGAAC-------UGCAAAUGCAGUUUUGUUUGUUUGUUCGCGCGGUUUUUGCACUGC ...----..(((((((((((....((.....))......((((((-------.((((((........))))))..)))))))))))...)))))).. ( -30.20) >DroYak_CAF1 24440 86 - 1 AAA----UAAGUGCAACCGCAGAAUGAAAUUCAAUUUGAGCGAAU-------UGCAAAUGCAGUUUUGUUUGUUUGUUCGCGCGGUUUUUGCACUGC ...----..(((((((((((.((((...)))).......((((((-------.((((((........))))))..)))))))))))...)))))).. ( -29.60) >consensus AAAUGCAUAAGUGCAGCCGCAAAACGAAAUUCAAUUUGAGCGAAUUUGCAAAUGCAAAUGCAGUUUUGUUUGUUUGUUCGCGCGGUUUUUGCACCGC ..........((((((((((....((((......)))).((((((........(((((......)))))......)))))))))))...)))))... (-21.08 = -21.64 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:19 2006