Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,440,648 – 2,440,761 |
Length | 113 |
Max. P | 0.565355 |
Location | 2,440,648 – 2,440,761 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.92 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -18.57 |
Energy contribution | -19.23 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2440648 113 - 22407834 CGGCGUGU-AGCACACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGCAAUUCACCGUAAAGGCCCCGUCG--ACUGC .(((((((-.................((((........))))((((............))))..)))))))........((((((.......((.....))......))--.)))) ( -25.72) >DroVir_CAF1 28876 111 - 1 UGGCGUGU-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCCGCGCAAUUGCCAAU--GGGCCCCCGGG--CCCGU ((((((((-((......((((....)))).....))))))..((((.....(((....((((....))))......)))...))))....))))((--(((((....))--))))) ( -38.50) >DroPse_CAF1 21916 91 - 1 CGGCGUGG-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGAUAUUCC------------------------ .((((((.-.((((............((((........))))(((.......)))...))))...)))))).....................------------------------ ( -22.90) >DroMoj_CAF1 30147 114 - 1 UGGCGUAUUCGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAAAGAUUCGCGCAAUUGCCAAU--GCGCCGCGUAGCUCCCGA .((((((((.((..............((((........))))((((...((((.....((((....)))).......)))).))))....)).)))--)))))............. ( -30.60) >DroAna_CAF1 24667 113 - 1 CGGCAUGU-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGAGCAAACGCGCCAAAAACGAGCAACGCAAUUCGCCGUAAAGGCCCCGGCA--CCCGC ((((..((-.(((..(((........((((........))))((((.....((.....))......)))).......)))...))).))..)))).....((....)).--..... ( -20.50) >DroPer_CAF1 22002 91 - 1 CGGCGUGG-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGAUAUUCC------------------------ .((((((.-.((((............((((........))))(((.......)))...))))...)))))).....................------------------------ ( -22.90) >consensus CGGCGUGU_AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGCAAUUCCC__U___GGCCCCG__G__CCCG_ .((((((...((((............((((........))))(((.......)))...))))...))))))............................................. (-18.57 = -19.23 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:16 2006