Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,416,354 – 2,416,474 |
Length | 120 |
Max. P | 0.649344 |
Location | 2,416,354 – 2,416,474 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.33 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -22.88 |
Energy contribution | -22.56 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.56 |
Structure conservation index | 0.82 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2416354 120 + 22407834 UACAUUAUCCAAAAACUGGAUACGACUAAAGACUUCUUCAUUAUUAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCUACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA .....((((((.....))))))....(((((((...............(((((((((((.........)))))))))))(((((......)))))....))))))).............. ( -29.20) >DroSec_CAF1 5192 120 + 1 UACAUUGUCCAAAAACUGGAUACGACUAAAGACUUCUUCAUUACAAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCCACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA .....((((((.....))))))....(((((((................((((((((((.........)))))))))).(((((......)))))....))))))).............. ( -27.70) >DroSim_CAF1 4869 120 + 1 UACAUUGUCCAAAAACUGGAUGCGACUAAAGACUUCUUCAUUACAAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCCACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA ..................(((((..((((((((................((((((((((.........)))))))))).(((((......)))))....)))))).))....)))))... ( -29.40) >DroEre_CAF1 5031 120 + 1 GAAAUUAUCCAAAAACUGGAUACGACCAAAAAGCGCAUCAUCGUGAUAAGCCAAGAGAUCAGCCUUACAUUUCUUCGCCACCUUCCACAAGAGGUAUUCGUCUUUGAGGACCGUAUCAAA ..................((((((.((..((((((..............((.(((((((.........))))))).)).(((((......)))))...)).))))..))..))))))... ( -22.60) >DroYak_CAF1 5665 120 + 1 CAAACUAUCCAAAAACUGGAUACGACUGAAAAGCGCAUUAUUGUGAAAGGCCAAGAGGUCGGCUUUACAUUUCUUCGCCACCUUCGACAAGAGGUAUUCGUCCUUGAGGAUGGUAUCGAA .....((((((.....))))))(((........((((....))))...(((.(((((((.(......)))))))).)))(((((......)))))..((((((....))))))..))).. ( -30.60) >consensus UACAUUAUCCAAAAACUGGAUACGACUAAAGACUUCUUCAUUAUAAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCCACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA .....((((((.....)))))).(((.......................((((((((((.........)))))))))).(((((......)))))....))).((((........)))). (-22.88 = -22.56 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:05 2006