Locus 850

Sequence ID 2L_DroMel_CAF1
Location 2,416,354 – 2,416,474
Length 120
Max. P 0.649344
window1378

overview

Window 8

Location 2,416,354 – 2,416,474
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.33
Mean single sequence MFE -27.90
Consensus MFE -22.88
Energy contribution -22.56
Covariance contribution -0.32
Combinations/Pair 1.14
Mean z-score -1.56
Structure conservation index 0.82
SVM decision value 0.24
SVM RNA-class probability 0.649344
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2416354 120 + 22407834
UACAUUAUCCAAAAACUGGAUACGACUAAAGACUUCUUCAUUAUUAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCUACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA
.....((((((.....))))))....(((((((...............(((((((((((.........)))))))))))(((((......)))))....))))))).............. ( -29.20)
>DroSec_CAF1 5192 120 + 1
UACAUUGUCCAAAAACUGGAUACGACUAAAGACUUCUUCAUUACAAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCCACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA
.....((((((.....))))))....(((((((................((((((((((.........)))))))))).(((((......)))))....))))))).............. ( -27.70)
>DroSim_CAF1 4869 120 + 1
UACAUUGUCCAAAAACUGGAUGCGACUAAAGACUUCUUCAUUACAAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCCACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA
..................(((((..((((((((................((((((((((.........)))))))))).(((((......)))))....)))))).))....)))))... ( -29.40)
>DroEre_CAF1 5031 120 + 1
GAAAUUAUCCAAAAACUGGAUACGACCAAAAAGCGCAUCAUCGUGAUAAGCCAAGAGAUCAGCCUUACAUUUCUUCGCCACCUUCCACAAGAGGUAUUCGUCUUUGAGGACCGUAUCAAA
..................((((((.((..((((((..............((.(((((((.........))))))).)).(((((......)))))...)).))))..))..))))))... ( -22.60)
>DroYak_CAF1 5665 120 + 1
CAAACUAUCCAAAAACUGGAUACGACUGAAAAGCGCAUUAUUGUGAAAGGCCAAGAGGUCGGCUUUACAUUUCUUCGCCACCUUCGACAAGAGGUAUUCGUCCUUGAGGAUGGUAUCGAA
.....((((((.....))))))(((........((((....))))...(((.(((((((.(......)))))))).)))(((((......)))))..((((((....))))))..))).. ( -30.60)
>consensus
UACAUUAUCCAAAAACUGGAUACGACUAAAGACUUCUUCAUUAUAAAAAGCGAAGAGGUCAGCUUUACAUUUCUUCGCCACCUUGCACAAGAGGUAUUCGUCUUUGAGAACAGCAUCGAA
.....((((((.....)))))).(((.......................((((((((((.........)))))))))).(((((......)))))....))).((((........)))). (-22.88 = -22.56 +  -0.32) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:05 2006