Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 299,877 – 299,973 |
Length | 96 |
Max. P | 0.633833 |
Location | 299,877 – 299,973 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.81 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -16.26 |
Energy contribution | -16.18 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -1.73 |
Structure conservation index | 0.61 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 299877 96 - 22407834 -------------UUGCAUUACUAUUGAUAGCUAAAAGUAGUUGCAAGGACUUCAAAUCGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGUAAUUC -------------((((((((((.(((.....))).)))))).((((((((.....((.(((.....))).))......)))))))))))).(((((...))))).... ( -24.00) >DroSec_CAF1 4523 109 - 1 UUGCAUGGUUUAAAUGCAUUACUAUUGAUAGCUAAGAGUAGUUGGAAAGACUUCAAGUCGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAAUAUCUGUAGUUC .(((((.......)))))..(((((.((((.......((((((((((....)))..((.(((((.(((.....)))...))))).)).)))))))..)))).))))).. ( -28.00) >DroSim_CAF1 4536 109 - 1 UUGCAUGGUUUAAAUGCAUUACUAUUGAUAGCUAGGAGUAGUUGGAAAGACUUCAAGUUGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAAUAUCUGUAGUUC .(((((.......)))))..(((((.((((.......((((((((((....)))..((.(((((.(((.....)))...))))).)).)))))))..)))).))))).. ( -28.00) >DroEre_CAF1 4594 96 - 1 UUGCGUUUUUUAAAGGCAUUACUAUUGCUACUUAAGCAUAGGUGGAGA-------------GACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGCAGUUC .(((((......((((((((.......(((((((....))))))).((-------------(.....)))))))).)))......)))))(((((((...))))))).. ( -27.20) >DroYak_CAF1 4434 109 - 1 UUACAUUAUUCAAAGGCACUACGUUUGCUGCUUAAGAAUAGUUGGAAAAACUUGAAAUGGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGCAGUUC ...((((((((..((((((.......).)))))..)))))).))..............((((((.(((.....)))...))))))....((((((((...)))))))). ( -25.70) >consensus UUGCAUGGUUUAAAUGCAUUACUAUUGAUAGCUAAGAGUAGUUGGAAAGACUUCAAAUCGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGUAGUUC ...............(((..........((((((....))))))...............(((((.(((.....)))...))))))))..(((((((.....))))))). (-16.26 = -16.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:20 2006