Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,413,364 – 2,413,471 |
Length | 107 |
Max. P | 0.788098 |
Location | 2,413,364 – 2,413,471 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 84.28 |
Mean single sequence MFE | -24.51 |
Consensus MFE | -19.29 |
Energy contribution | -20.62 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.79 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2413364 107 + 22407834 UCCUUUUCUUUCUGUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGUUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU ...........(((((..((((((..(((((......)))))...........((((((....)))))).)))))))))))....((.((((.....)))))).... ( -27.10) >DroSec_CAF1 2164 107 + 1 UCCUUUUCUUUCCCUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGCUGUGGUCGCGGUCAUGCCUCAAUUGUGUUGAGCUUUU .............(((..((((((.....(((((((.((......................)))))))))))))))..)))....((.(((((...))))))).... ( -28.65) >DroSim_CAF1 1844 107 + 1 UCCUUUUCUUUCUCUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGUUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU .............(((..((((((..(((((......)))))...........((((((....)))))).))))))..)))....((.((((.....)))))).... ( -28.00) >DroEre_CAF1 2025 106 + 1 UCCUUUUCUUUCUCUGUAGCCAUAUCAGCUUCCACCCGCACUCCAC-CUUCUCCCCACUUAGCAAUGGGCUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU .............(((..((((((...((........)).......-......((((........)))).))))))..)))....((.((((.....)))))).... ( -19.60) >DroYak_CAF1 2090 81 + 1 UCCUUUUCUUUCUCUGUAACC--------------------------CUACUGCCCACUUAGCAAUGGGCACUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU .............(((..(((--------------------------....((((((........))))))..)))..)))....((.((((.....)))))).... ( -19.20) >consensus UCCUUUUCUUUCUCUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGCUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU .............(((..((((((..(((((......)))))...........((((((....)))))).))))))..)))....((.((((.....)))))).... (-19.29 = -20.62 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:01 2006