| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,408,033 – 2,408,130 |
| Length | 97 |
| Max. P | 0.541250 |
| Location | 2,408,033 – 2,408,130 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -14.69 |
| Energy contribution | -15.42 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2408033 97 - 22407834 CCCUAUCUUGUGUUGCAGUUUCGAU-UUCGGAGCUUGUAAAUAGAAAUUCGCGUAAGCGAGA---CCCUAAUAGUAUAUACUAUAUAUGCUUUAUAGAUCG .....(((....(((((((((((..-..)))))).)))))..)))..(((((....))))).---..(((..((((((((...))))))))...))).... ( -26.10) >DroSec_CAF1 25816 97 - 1 CCCUAUCUUGUGUUGCAGUUUCGUU-UUCGGAGCAUGUAAAUAGAAAUUCGCGUAAGCGAGA---CCCUAAUAGUAUAUACUAUGUAUGCUUUAUAGAUCG .....(((....(((((((((((..-..)))))).)))))..)))..(((((....))))).---..(((..(((((((.....)))))))...))).... ( -25.60) >DroSim_CAF1 26586 97 - 1 CCCUAUCUUGUGUUGCAGUUUCGAU-UUCGGAGCUUGUAAAUAGAAAUUCGCGUAAGCGAGA---CCCUAAUAGUAUAUACUAUGUAUGCUUUAUAGAUCG .....(((....(((((((((((..-..)))))).)))))..)))..(((((....))))).---..(((..(((((((.....)))))))...))).... ( -26.20) >DroEre_CAF1 27202 90 - 1 CCCUAUCUUGUGUUGCAGUUUCGAUUUUCAGAGCUUGUAAAUAGAAAUUCGCGUAAGCGAGA---CCCUAAUAGU--------UAUAUGCUUUAUAGAUCG .....................((((((..(((((.(((((.(((...(((((....))))).---..)))....)--------)))).)))))..)))))) ( -21.40) >DroYak_CAF1 28175 91 - 1 CCCUAUCUUGUGUUGCAGUUUCGAUUUUCAGAGCUUGUAAAUAGAAAUUCGCGUAAGCGAGA---CCCUAAUAGUA-------UAUAUGCUUUAUAGGUCG .....(((....((((((.(((........))).))))))..)))...((((....))))((---((.....((((-------....)))).....)))). ( -22.40) >DroPer_CAF1 37935 79 - 1 UGC--UUUUGCUUUGUUUUUUCGGU-U--GGAGCUUGUAAAUAGAAAUUCGCGGAAGCGAUGGUGCCUUAA-----------------GACCUAUAGAUCG .((--((..(((..........)))-.--.))))(((((.........((((....)))).(((.......-----------------.)))))))).... ( -15.70) >consensus CCCUAUCUUGUGUUGCAGUUUCGAU_UUCGGAGCUUGUAAAUAGAAAUUCGCGUAAGCGAGA___CCCUAAUAGUA_______UAUAUGCUUUAUAGAUCG .....(((....(((((((((((.....)))))).)))))..)))..(((((....)))))........................................ (-14.69 = -15.42 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:00 2006