Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,407,156 – 2,407,261 |
Length | 105 |
Max. P | 0.882278 |
Location | 2,407,156 – 2,407,261 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -42.29 |
Consensus MFE | -34.78 |
Energy contribution | -34.39 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.26 |
Mean z-score | -2.19 |
Structure conservation index | 0.82 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2407156 105 + 22407834 ---------------UAGCCUACCGGGUGUUGGACUACAGUCUUCACCCUGGCCGCCUGUGUUCAUUUGGUUGGCUGCACUUUCUAUGGUAUUUUCGCAUCUGGAGAGCUGCAGCCGUGG ---------------....((((.(((((..((((....)))).))))).(((((..((....))..)))))((((((((((((((.(((........)))))))))).))))))))))) ( -40.70) >DroPse_CAF1 35815 112 + 1 --------AUCGUUGCAGCCCACUGGCUGUUGGACCACUGUGUUCACCCUGGCCGCCUGUGUUCAUCUGGUGGGCUGCACUUUCUACGGCAUCUUCGCCUCUGGAGAGCUGCAGCCCUGG --------......((((((....))))))...((((..(((..(((...((...)).)))..))).))))(((((((((((((((.(((......)))..))))))).))))))))... ( -45.70) >DroEre_CAF1 26311 120 + 1 UAUAUUCUAAUGUUUCAGCCCACCGGUUGCUGGACCACUGUCUUCACCCUGGCCGCAUGUGUUCACUUGGUUGGCUGCACUUUCUACGGCGUUUUUGCCUCCGGAGAGCUGCAGCCGUGG .............((((((((...))..))))))((((............(((((..((....))..)))))(((((((((((((..((((....))))...)))))).))))))))))) ( -39.90) >DroYak_CAF1 27284 120 + 1 UAUAUUCAAUUGUUUCAGCCCACCGGUUGCUGGACCACUGUCUUCACCCUGGCCGCCUGUGUUCAUUUGGUUGGCUGCACUUUCUACGGCAUUUUUGCCUCCGGAGAGCUGCAGCCGUGG .............((((((((...))..))))))((((............(((((..((....))..)))))(((((((((((((..((((....))))...)))))).))))))))))) ( -40.60) >DroAna_CAF1 31266 114 + 1 --AAUUAAA----UUUAGCCCACCGGCUGCUGGACCACCGUCUUCACCUUGGCCGCCUGUGUUCAUUUGAUUGGCUGCACUUUCUACGGAAUCUUUGCUUCCGGAGAGUUGCAGCCUUGG --(((((((----(...(..(((.(((.(((((((....)))).......))).))).)))..)))))))))((((((((((((..(((((.......)))))))))).))))))).... ( -38.81) >DroPer_CAF1 37038 112 + 1 --------AUCGUUGCAGCCCACUGGCUGCUGGACCACUGUGUUCACCCUGGCCGCCUGUGUUCAUCUGGUGGGCUGCACUUUCUACGGCAUCUUCGCCUCUGGAGAGCUGCAGCCCUGG --------......((((((....))))))...((((..(((..(((...((...)).)))..))).))))(((((((((((((((.(((......)))..))))))).))))))))... ( -48.00) >consensus ________AU_GUUUCAGCCCACCGGCUGCUGGACCACUGUCUUCACCCUGGCCGCCUGUGUUCAUUUGGUUGGCUGCACUUUCUACGGCAUCUUCGCCUCCGGAGAGCUGCAGCCGUGG .................(..(((.(((.((..(...............)..)).))).)))..).......((((((((((((((..(((......)))...)))))).))))))))... (-34.78 = -34.39 + -0.38)
Location | 2,407,156 – 2,407,261 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -39.20 |
Consensus MFE | -26.60 |
Energy contribution | -28.10 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.68 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2407156 105 - 22407834 CCACGGCUGCAGCUCUCCAGAUGCGAAAAUACCAUAGAAAGUGCAGCCAACCAAAUGAACACAGGCGGCCAGGGUGAAGACUGUAGUCCAACACCCGGUAGGCUA--------------- ....(((((((.((.((...(((.(......)))).)).)))))))))...............(((.(((.(((((..(((....)))...))))))))..))).--------------- ( -33.80) >DroPse_CAF1 35815 112 - 1 CCAGGGCUGCAGCUCUCCAGAGGCGAAGAUGCCGUAGAAAGUGCAGCCCACCAGAUGAACACAGGCGGCCAGGGUGAACACAGUGGUCCAACAGCCAGUGGGCUGCAACGAU-------- ...((((((((.((.((....(((......)))...)).))))))))))...............((((((...(....).((.((((......)))).))))))))......-------- ( -42.50) >DroEre_CAF1 26311 120 - 1 CCACGGCUGCAGCUCUCCGGAGGCAAAAACGCCGUAGAAAGUGCAGCCAACCAAGUGAACACAUGCGGCCAGGGUGAAGACAGUGGUCCAGCAACCGGUGGGCUGAAACAUUAGAAUAUA (((((((((((.((.((....(((......)))...)).)))))))))...............((((((((..((....))..))).)).)))....)))).((((....))))...... ( -37.20) >DroYak_CAF1 27284 120 - 1 CCACGGCUGCAGCUCUCCGGAGGCAAAAAUGCCGUAGAAAGUGCAGCCAACCAAAUGAACACAGGCGGCCAGGGUGAAGACAGUGGUCCAGCAACCGGUGGGCUGAAACAAUUGAAUAUA ....(((((((.((.((....((((....))))...)).)))))))))...(((.((....(((.(.(((.((.((..(((....)))...)).))))).).)))...)).)))...... ( -38.80) >DroAna_CAF1 31266 114 - 1 CCAAGGCUGCAACUCUCCGGAAGCAAAGAUUCCGUAGAAAGUGCAGCCAAUCAAAUGAACACAGGCGGCCAAGGUGAAGACGGUGGUCCAGCAGCCGGUGGGCUAAA----UUUAAUU-- ....(((((((..(((.(((((.......))))).)))...)))))))........(..(((.((((((((..((....))..))))).....))).)))..)....----.......-- ( -39.20) >DroPer_CAF1 37038 112 - 1 CCAGGGCUGCAGCUCUCCAGAGGCGAAGAUGCCGUAGAAAGUGCAGCCCACCAGAUGAACACAGGCGGCCAGGGUGAACACAGUGGUCCAGCAGCCAGUGGGCUGCAACGAU-------- ...((((((((.((.((....(((......)))...)).))))))))))...............(.(((((..((....))..)))))).((((((....))))))......-------- ( -43.70) >consensus CCACGGCUGCAGCUCUCCAGAGGCAAAAAUGCCGUAGAAAGUGCAGCCAACCAAAUGAACACAGGCGGCCAGGGUGAAGACAGUGGUCCAGCAGCCGGUGGGCUGAAAC_AU________ ....(((((((.((.((....(((......)))...)).))))))))).................(((((.((.((..(((....)))...)).))....)))))............... (-26.60 = -28.10 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:59 2006