Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,405,242 – 2,405,378 |
Length | 136 |
Max. P | 0.950187 |
Location | 2,405,242 – 2,405,348 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -19.23 |
Energy contribution | -18.72 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.67 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2405242 106 + 22407834 AGGAGUGAGUUAUUCAUAAAAUUCGCUUCAUUUGACGAGAAGCUGCUGUCAAUUAGGGAGUGUGUG-UGUGGGUGUGGGUGGAUGUGGCUCAAAAGUCAUACAUACA .((((((((((........))))))))))..(((((.((......)))))))........((((((-(((((.(.(((((.......)))))..).))))))))))) ( -31.60) >DroSec_CAF1 23149 85 + 1 --------------------AUUCUCUUCAUUUGACGAGAAGCUGCUGUCAAUUAGGGAGUGUGUGGUGUG--UGUGGGUGGAUGUGACUCAAAAGUCAUACAUACA --------------------(((((((....(((((.((......)))))))..))))))).....(((((--(((((.(.((......))...).)))))))))). ( -24.30) >DroSim_CAF1 23945 94 + 1 AGGAGUU-------------AUUCGCUUCAUUUGACGAGAAGCUGCUGUCAAUUAGGGAGUGUGUGGUGUGUGUGUGGGUGGAUGUGACUCAAAAGUCAUACAUACA .....((-------------((.((((((..(((((.((......)))))))....)))))).))))(((((((((((.(.((......))...).))))))))))) ( -26.10) >DroYak_CAF1 25317 104 + 1 AUGGAUCCCUCAUUCAUAAAAUUCGCUUCAUUUGACGAGAAGCUGUUGUCAAUUAGGGAGUGUGUC---UGUGUAUGGGUGGGUAUGACUCAAAAGUCAUACAUGCA ......(((((((.((((.(...((((((..(((((((.......)))))))....))))))..).---)))).))))).))((((((((....))))))))..... ( -32.70) >consensus AGGAGU______________AUUCGCUUCAUUUGACGAGAAGCUGCUGUCAAUUAGGGAGUGUGUG_UGUGUGUGUGGGUGGAUGUGACUCAAAAGUCAUACAUACA .......................((((((..(((((.((......)))))))....))))))................(((..(((((((....)))))))..))). (-19.23 = -18.72 + -0.50)
Location | 2,405,278 – 2,405,378 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 75.68 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -12.90 |
Energy contribution | -15.34 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.18 |
Mean z-score | -2.13 |
Structure conservation index | 0.44 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2405278 100 + 22407834 GAGAAGCUGCUGUCAAUUAGGGAGUGUGUG-UGUGGGUGUGGGUGGAU-------GUGGCUCAAAAGUCAUACAUACACAAAAGGACACGCACCCACACAG------ACCCAUC- .....(((.((........)).)))((.((-((((((((((.(((..(-------((((((....)))))))..))).(....)....)))))))))))).------)).....- ( -36.00) >DroPse_CAF1 33298 92 + 1 AAAAAGCUGCUGUCAAUUAGGGUGU-------------GUGGAUGGAUACUCAAAAUCACUCAAAAGUCAUACA----GGAAAAGCCACGCCCCCACACAC------ACACACAG ......((((((.....))).((((-------------(((..(((............(((....)))......----((.....))......)))..)))------)))).))) ( -17.40) >DroSec_CAF1 23165 99 + 1 GAGAAGCUGCUGUCAAUUAGGGAGUGUGUGGUGUG--UGUGGGUGGAU-------GUGACUCAAAAGUCAUACAUACACAAAAGGACACGCCCCCACACAG------ACCCAUC- .....(((.((........)).)))(((.(((.((--((((((.((.(-------((((((....)))))))...........(....).)))))))))).------)))))).- ( -33.70) >DroSim_CAF1 23968 100 + 1 GAGAAGCUGCUGUCAAUUAGGGAGUGUGUGGUGUGUGUGUGGGUGGAU-------GUGACUCAAAAGUCAUACAUACACAA-AGGACACGCCCCCACACAG------ACCCAUC- ...................(((..(((((((.((((((.(..(((..(-------((((((....)))))))....)))..-.).))))))..))))))).------.)))...- ( -36.40) >DroYak_CAF1 25353 104 + 1 GAGAAGCUGUUGUCAAUUAGGGAGUGUGUC---UGUGUAUGGGUGGGU-------AUGACUCAAAAGUCAUACAUGCACAAAAGGACACGCCCCCACACACACAGCCACCCAUC- .....((((((((......(((.(((((((---(((((((......((-------((((((....))))))))))))))....)))))))))))...))).)))))........- ( -36.50) >DroPer_CAF1 34525 92 + 1 AAAAAGCUGCUGUCAAUUAGGGUGU-------------GUGGAUGGAUACUCAAAAUCACUCAAAAGUCAUACA----GGAAAAGCCACGCCCCCACACAC------ACACACAG ......((((((.....))).((((-------------(((..(((............(((....)))......----((.....))......)))..)))------)))).))) ( -17.40) >consensus GAGAAGCUGCUGUCAAUUAGGGAGUGUGUG___UG__UGUGGGUGGAU_______AUGACUCAAAAGUCAUACAUACACAAAAGGACACGCCCCCACACAC______ACCCAUC_ ...................(((.((((((....((.(((((..............((((((....)))))).))))).)).....)))))).))).................... (-12.90 = -15.34 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:56 2006