Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,403,882 – 2,403,984 |
Length | 102 |
Max. P | 0.702945 |
Location | 2,403,882 – 2,403,984 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.41 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -21.94 |
Energy contribution | -23.81 |
Covariance contribution | 1.86 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.65 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2403882 102 - 22407834 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---GAAAAAAAGGAGCUGAGGGAACGACUU----GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.((((...((((....))))...(((.((---(.....(((..(((((((((.((....----.)))))))).)))..))).))))))))))))).......--- ( -35.60) >DroSec_CAF1 21804 101 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---A-AAAAAAGGAGCUGAGGGAACGACUU----GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.(((((((((((...((((..........---.-.....))))(((((((((.((....----.)))))))).)))..))))))...)))))))).......--- ( -34.19) >DroSim_CAF1 22595 101 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---A-AAAAAAGGAGCUGAGGGAACGACUU----GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.(((((((((((...((((..........---.-.....))))(((((((((.((....----.)))))))).)))..))))))...)))))))).......--- ( -34.19) >DroEre_CAF1 22992 88 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---A-AAAAAAGGAGCUG-----------------CGUCCUUCGCACAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.(((((((((((..(((((..........---.-.....))))).((-----------------((.....))))...))))))...)))))))).......--- ( -27.49) >DroYak_CAF1 23947 108 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGCGCAA-AAAAAAGGAGCUGAGGGAACGACUUAUGUACGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.((((...((((....))))...(((.(((((.-.....((..(((((((((.((((....)).)))))))).)))..))))))))))))))))).......--- ( -38.80) >DroPer_CAF1 33018 92 - 1 CCUCGUCUGGUCACGCAGGACCGG-----GAAGCCCGCCC-CACAGAGAGGCCGAGA--------------AGUCCUUCCGAUGUCUUGUGCGUUGACCGACUUUAAGGAAG (((.(((.(((((((((((..(((-----(...))))..)-)...((((.(.((.((--------------(....))))).).)))).)))).))))))))....)))... ( -31.90) >consensus CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC___A_AAAAAAGGAGCUGAGGGAACGACUU____GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG___ (((.(((.(((((((((((..(((((....................)))))..((((((..............))))))......))))))...))))))))....)))... (-21.94 = -23.81 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:55 2006