Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,397,068 – 2,397,172 |
Length | 104 |
Max. P | 0.761984 |
Location | 2,397,068 – 2,397,172 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -16.81 |
Energy contribution | -17.17 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.86 |
Structure conservation index | 0.55 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2397068 104 - 22407834 GGCGGUAUACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUUGCGUUC-------GUUUUUUGAGUUUUACCCUCAAAAUGCAUGAGUUUGCUCAU ((((((((((.((((((....))))))(((....)))))))))))))................-------((.(((((((.......))))))).))(((((....))))) ( -33.70) >DroPse_CAF1 22920 102 - 1 G---GCAUACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGUCGAGCAUUGUUACUGCUUUCCAGUGCUGUUUUUUGUGUUUUACCCUCAAAAUGCAUAAAU------AU (---((((((.((((((....))))))(((....)))))))))).(((((((..(.....)..)))))))((((..((((((((......)))))))).))))------.. ( -27.00) >DroEre_CAF1 16159 104 - 1 GGCGGUACACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUUGCGUUC-------GUUUUUUGAGUUUUACCCUCAAAAUGCAUGGGUUUACUCAU ((((((((((.((((((....))))))(((....)))))))))))))................-------......(((((...((((...........))))..))))). ( -35.30) >DroYak_CAF1 15954 104 - 1 GGCGGUAUAACGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUGGCGUUC-------GUUUUUUGAGUUUUACCCUCAAAACGCAGGGGUUUACUCAU ((((.....((((((((....)))))))))))).((((..((((((........))))))..)-------)))...(((((...(((((.........)))))..))))). ( -38.10) >DroAna_CAF1 18263 80 - 1 GGCGGCAUACCGGAAGCAAAUGCUUUUGUCGCCAGGCGUGUGUCG-------------------------GUUUUUUGUGUUUUACCCUCAAAAUGCAUAAAU------AU ..((((((((.((((((....))))))(((....)))))))))))-------------------------((((..((((((((......)))))))).))))------.. ( -22.70) >DroPer_CAF1 24183 102 - 1 G---GCAUACCGGAAGCAAAUACUUUUGUCGCCCGGCGUGUGUCGAGCAUUGUUACUGCUUUCCAGUGCUGUUUUUUGUGUUUUACCCUCAAAAUGCAUAAAU------AU (---(((((((((..(((((....)))))...))))..)))))).(((((((..(.....)..)))))))((((..((((((((......)))))))).))))------.. ( -25.90) >consensus GGCGGCAUACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUUGCGUUC_______GUUUUUUGAGUUUUACCCUCAAAAUGCAUAAAU______AU ..((((((((.((((((....))))))(((....))))))))))).........................((.(((((...........))))).)).............. (-16.81 = -17.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:52 2006