Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,394,216 – 2,394,306 |
Length | 90 |
Max. P | 0.535615 |
Location | 2,394,216 – 2,394,306 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 83.78 |
Mean single sequence MFE | -15.95 |
Consensus MFE | -10.81 |
Energy contribution | -11.00 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.01 |
Structure conservation index | 0.68 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2394216 90 - 22407834 UAAAAAUGCCCCCCAAAUGGGCAAUGAACCACC-GA-------AAACACACAACUACCCACACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG ......(((((.......)))))..........-..-------...............(((((.....(((..............))).....))))) ( -14.84) >DroSec_CAF1 12255 77 - 1 UAAAAAUGCC--CCAAAUGGGCAAUGAACCCCCCGA-------AAACA------------CACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG ......((((--(.....))))).............-------..(((------------(.((((((.((..............)))))))))))). ( -16.34) >DroSim_CAF1 12970 77 - 1 UAAAAAUGCC--CCAAAUGGGCAAUGAACCCCCAGA-------AAACA------------CACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG ......((((--(.....))))).............-------..(((------------(.((((((.((..............)))))))))))). ( -16.34) >DroEre_CAF1 13375 87 - 1 UAAAAAUGCCC-CCAAACGGGCAAUGAACCCCCAA--------AAAC--ACAUCUACCCACACAUUUGGUCAAGGAAAACAAUCAGGCAAAUGGUGUG ......(((((-......)))))............--------....--.........(((((.....(((...((......)).))).....))))) ( -16.50) >DroYak_CAF1 13157 95 - 1 UAAAAAUGUCC-CCAAAUGGGCAAUGAACCCCCAAAACAAAAAAAAC--ACAUCUACCCACACAUUUGGUCAAGGAAAACAAUCAGGCAAAUGGUGUG ......(((((-......)))))........................--.........(((((.....(((...((......)).))).....))))) ( -13.70) >DroAna_CAF1 14741 76 - 1 UAAAAAUGCCC-CCAAAUGGGCAAUGAACCCC--AA-------AAACA------------CACAUUUGGUCAAUGAAAACAAUCAGGCAAAUGGUGUG ......(((((-......))))).........--..-------..(((------------(.((((((.((..(((......))))))))))))))). ( -18.00) >consensus UAAAAAUGCCC_CCAAAUGGGCAAUGAACCCCCAAA_______AAACA____________CACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG ......(((((.......))))).....................................((((((..(((...((......)).)))....)))))) (-10.81 = -11.00 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:51 2006