Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 297,288 – 297,383 |
Length | 95 |
Max. P | 0.999479 |
Location | 297,288 – 297,383 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -22.24 |
Energy contribution | -22.05 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.16 |
Mean z-score | -2.87 |
Structure conservation index | 0.87 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.994937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 297288 95 + 22407834 AGAAAACAAAAUCAUUGAUAAAUGUCUGCCUAAUUGAUUUACGCAGACGGGUGGAGUAGGCUCCAAACGUCAUGGUCCUUAUUUUCUUACUACAA ((((((.((.(((((.(((....((((((.(((.....))).))))))(..(((((....)))))..)))))))))..)).))))))........ ( -27.00) >DroSec_CAF1 1950 95 + 1 AGAAAAAAAAAUCAUUGAUAAAUGUCUGCCUAAUUGUUUUACGCAGACGGGUGGAGUAGGCUCCAAACGUCAUGGUCCUUAUUUUCUUACUACAA ((((((.((.(((((.(((....((((((.(((.....))).))))))(..(((((....)))))..)))))))))..)).))))))........ ( -27.00) >DroSim_CAF1 1929 95 + 1 AGAAAACAAAAUCAUUGAUAAAUGUCUGCCUAAUUGUUUUACGCAGACGGGUGGAGUAGGCUCCAAACGUCAUGGUCCUUAUUUUCUUACUACAA ((((((.((.(((((.(((....((((((.(((.....))).))))))(..(((((....)))))..)))))))))..)).))))))........ ( -27.00) >DroEre_CAF1 1914 95 + 1 AGGAAACAAAGUAAUUGAUAAACGUCUGCCUAAUUGAUUUACGCAGAUGAGUGAAGUAGGCUCCAAACGUCAUGGUCCUUAUUUUCUUACUACAA .(....)..(((((........(((((((.(((.....))).)))))))...((((((((..(((.......)))..)))))))).))))).... ( -22.90) >DroYak_CAF1 1907 95 + 1 AGGAAACAAAAUCAUUGAUAAACAUCUGCCUAAUUGAUUUACGCAGAUGGGUGGAGUAGGCUCCAAACGUCAUGGUCCUUAUUUUCUUACUACAA ((((((.((.(((((.(((...(((((((.(((.....))).)))))))..(((((....)))))...))))))))..)).))))))........ ( -25.00) >DroAna_CAF1 2496 94 + 1 AGAAUAUAAAAUCAUUGAUAAAUGUCUGCCUAGUUGAUUUACGCAGACGGAUGGAGUAGGCUCCA-ACGUCAAGGUCCUUAUUUUCUUACUACAA ((((.((((.(((.(((((...(((((((.(((.....))).)))))))..(((((....)))))-..))))))))..)))).))))........ ( -25.10) >consensus AGAAAACAAAAUCAUUGAUAAAUGUCUGCCUAAUUGAUUUACGCAGACGGGUGGAGUAGGCUCCAAACGUCAUGGUCCUUAUUUUCUUACUACAA ((((((.((.(((((.(((....((((((.(((.....))).))))))(..(((((....)))))..)))))))))..)).))))))........ (-22.24 = -22.05 + -0.19)
Location | 297,288 – 297,383 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -22.59 |
Energy contribution | -22.98 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.96 |
SVM decision value | 3.64 |
SVM RNA-class probability | 0.999479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 297288 95 - 22407834 UUGUAGUAAGAAAAUAAGGACCAUGACGUUUGGAGCCUACUCCACCCGUCUGCGUAAAUCAAUUAGGCAGACAUUUAUCAAUGAUUUUGUUUUCU ........(((((((((((..(((((.(..(((((....)))))..)((((((.(((.....))).)))))).....)).))).))))))))))) ( -26.90) >DroSec_CAF1 1950 95 - 1 UUGUAGUAAGAAAAUAAGGACCAUGACGUUUGGAGCCUACUCCACCCGUCUGCGUAAAACAAUUAGGCAGACAUUUAUCAAUGAUUUUUUUUUCU ........((((((.(((((.(((((.(..(((((....)))))..)((((((.(((.....))).)))))).....)).))).))))))))))) ( -24.80) >DroSim_CAF1 1929 95 - 1 UUGUAGUAAGAAAAUAAGGACCAUGACGUUUGGAGCCUACUCCACCCGUCUGCGUAAAACAAUUAGGCAGACAUUUAUCAAUGAUUUUGUUUUCU ........(((((((((((..(((((.(..(((((....)))))..)((((((.(((.....))).)))))).....)).))).))))))))))) ( -26.90) >DroEre_CAF1 1914 95 - 1 UUGUAGUAAGAAAAUAAGGACCAUGACGUUUGGAGCCUACUUCACUCAUCUGCGUAAAUCAAUUAGGCAGACGUUUAUCAAUUACUUUGUUUCCU ........((.((((((((....(((.(..(((((....)))))..).(((((.(((.....))).)))))......)))....)))))))).)) ( -17.70) >DroYak_CAF1 1907 95 - 1 UUGUAGUAAGAAAAUAAGGACCAUGACGUUUGGAGCCUACUCCACCCAUCUGCGUAAAUCAAUUAGGCAGAUGUUUAUCAAUGAUUUUGUUUCCU .........((((...((((.(((((....(((((....)))))..(((((((.(((.....))).)))))))....)).))).)))).)))).. ( -21.80) >DroAna_CAF1 2496 94 - 1 UUGUAGUAAGAAAAUAAGGACCUUGACGU-UGGAGCCUACUCCAUCCGUCUGCGUAAAUCAACUAGGCAGACAUUUAUCAAUGAUUUUAUAUUCU ........((((.((((((.(.((((...-(((((....)))))...((((((.((.......)).)))))).....)))).).)))))).)))) ( -23.60) >consensus UUGUAGUAAGAAAAUAAGGACCAUGACGUUUGGAGCCUACUCCACCCGUCUGCGUAAAUCAAUUAGGCAGACAUUUAUCAAUGAUUUUGUUUUCU ........(((((((((((....(((.(..(((((....)))))..)((((((.(((.....))).)))))).....)))....))))))))))) (-22.59 = -22.98 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:18 2006