Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,391,581 – 2,391,672 |
Length | 91 |
Max. P | 0.506419 |
Location | 2,391,581 – 2,391,672 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -24.72 |
Energy contribution | -24.77 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2391581 91 + 22407834 CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCGUUUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAAUGACUGGCGCCACACACAAACCAC ........((..((((..(.((...(((((((((.....))))).)))).)).)..))))((((((.....))).))).........)).. ( -24.90) >DroSec_CAF1 9599 91 + 1 CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCUUUUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC ........((..((((....(((((((....))))))).(((....))).......))))(((((((...)))).))).........)).. ( -26.40) >DroSim_CAF1 10290 91 + 1 CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCGUUUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGGCUGGCGCCACACACAAACCAC ..(((((..(((.....)))..)))))....((((.((.((((.(((((((.....(....)....))))))).)))).))...))))... ( -28.30) >DroEre_CAF1 10702 91 + 1 CAUUUUCCGGACGGGGAGUCCAAAAAGCUUCGCCUUUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC ........((..((((.........(((((((((.....))))).)))).......))))(((((((...)))).))).........)).. ( -30.99) >DroYak_CAF1 10361 91 + 1 CAUUUUCCGGGCGGGGAGUCCUGAAAGCUUCGCCUUUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC ........((((.(((.((......(((((((((.....))))).))))......))))).)))).(((..((....))..)))....... ( -32.30) >DroAna_CAF1 11647 80 + 1 CAUUU--CGGACG---------GAAAGCUCCGUCCGUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUCAGUGGCGCCAAACACAAACCAU .....--.(((((---------((....)))))))(((.(((....)))...........((((((.....))).)))...)))....... ( -26.30) >consensus CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCGUCUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC ........((..((((.........(((((((((.....))))).)))).......))))((((((.....))).))).........)).. (-24.72 = -24.77 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:50 2006