Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,388,558 – 2,388,653 |
Length | 95 |
Max. P | 0.785772 |
Location | 2,388,558 – 2,388,653 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 87.66 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -19.80 |
Energy contribution | -20.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.85 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2388558 95 - 22407834 CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAACAACAACAAAAAAAAAUGAGGCAGAAGUGAUG (((..((((.(((((.(((((....)).))).))))).))))(((...((((.(((--..(....).))).)))).........)))....)))... ( -23.30) >DroSec_CAF1 6563 94 - 1 CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAAGAAAAA-AGAAAAAAAUGUGGCAGAAAUGAGG ((((.((((.(((((.(((((....)).))).))))).))))((((((......))--.))))........-.........)))).((....))... ( -25.00) >DroSim_CAF1 7237 94 - 1 CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAAGAAAAA-AGAAAAAAAUGUGGCAGAAAUGAGG ((((.((((.(((((.(((((....)).))).))))).))))((((((......))--.))))........-.........)))).((....))... ( -25.00) >DroEre_CAF1 7476 89 - 1 CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCCGCAAAAA------AAAAAAAUGAGGCAAAAGUGAAG ..((.((((.(((((.(((((....)).))).))))).))))..)).(((..((.(--(((.((....------.......)).))))..))..))) ( -26.50) >DroYak_CAF1 7333 91 - 1 CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAAAAU----ACAAAAAAAUGAGGCAACAUUGAAG ..((.((((.(((((.(((((....)).))).))))).))))..))..((((((..--..))))))..----............(....)....... ( -22.10) >DroAna_CAF1 8597 89 - 1 CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUUCUGACUUUGCUCUGGGCCGCAACAAAA----AAAAAAAUAAAGUAAA----AAG ..(((((((.(((((.(((((....)).))).))))).))))).))...((((........)))).....----................----... ( -18.00) >consensus CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU__GCGGCAAAAAAA__A_AAAAAAAUGAGGCAAAAAUGAAG ..((.((((.(((((.(((((....)).))).))))).))))..))...((((((....))))))................................ (-19.80 = -20.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:47 2006