Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,388,384 – 2,388,485 |
Length | 101 |
Max. P | 0.678565 |
Location | 2,388,384 – 2,388,485 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.79 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -17.39 |
Energy contribution | -16.76 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.22 |
Mean z-score | -2.27 |
Structure conservation index | 0.65 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2388384 101 - 22407834 CUCGGCU--UUUUAUUGCGAUUU--UUUCGCAAUGUU-UUC-GCUCUUUGUGUGAGUUUAUCAAGCUCCUUACAUUUGUUUUCCUGUAAAACGGGGGCAACU-------UCCCC------ ...(((.--...((((((((...--..))))))))..-...-)))...((((.(((((.....)))))..))))...(((((.....)))))(((((.....-------)))))------ ( -24.40) >DroPse_CAF1 12560 117 - 1 CUCGGAUUUUUUUAUUGCGAUUU--UUUCGCAAUGUUUUUG-GGUCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAAUGGGGGAAGUGCCGCCCUGCCUCGGCCGA .((((.......((((((((...--..)))))))).....(-(((...((((.(((((.....)))))..)))).....((((((.(.....).))))))....))))........)))) ( -31.70) >DroEre_CAF1 7303 100 - 1 CUCGGCU--UUUUAUUGCAAUUU--UUUCGCAAUGUU-UUC--GUCUUUGUGUGAGUUUAUCAAGCUCCUUACAUUUGUUUUCCUGUAAAACGGGGGCAACU-------UCCCU------ ...(((.--...((((((.....--....))))))..-...--)))..((((.(((((.....)))))..))))...(((((((((.....)))))).))).-------.....------ ( -18.90) >DroYak_CAF1 7159 101 - 1 CUCGGCU--UUUUAUUGCGAUUU--UUUCGCAAUGUU-UUC-GGUCUUUGUGUGAGUUUAUCAAGCUUCUUACAUUUGUUUUCCUGUAAAACGGGGGCAACU-------UCCCU------ ...((((--...((((((((...--..))))))))..-...-))))...(((((((............)))))))..(((((((((.....)))))).))).-------.....------ ( -24.00) >DroAna_CAF1 8420 107 - 1 CUCGGAUU-UUUUAUUGCGAUUUUUUUUCGCAAUGUU-UUGAGGCCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAACGGAGGCUGUUUU-----UUCCC------ ((((((..-...((((((((.......)))))))).)-)))))((((((((..(((((.....)))))......(((((......)))))))))))))......-----.....------ ( -30.30) >DroPer_CAF1 13808 116 - 1 CUCGGAUUUUUUUAUUGCGAUUU--UUUCGCAAUGUU-UUG-GGUCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAAUGGGGGAAGUGCCGCCCUGCCUCGGCCGA .((((.......((((((((...--..))))))))..-..(-(((...((((.(((((.....)))))..)))).....((((((.(.....).))))))....))))........)))) ( -31.70) >consensus CUCGGAU__UUUUAUUGCGAUUU__UUUCGCAAUGUU_UUC_GGUCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAACGGGGGCAACU_______UCCCC______ ...((.......((((((((.......)))))))).............((((.(((((.....)))))..))))........))........((((..............))))...... (-17.39 = -16.76 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:46 2006