Locus 832

Sequence ID 2L_DroMel_CAF1
Location 2,382,871 – 2,382,981
Length 110
Max. P 0.545884
window1349

overview

Window 9

Location 2,382,871 – 2,382,981
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 83.88
Mean single sequence MFE -35.32
Consensus MFE -23.05
Energy contribution -23.00
Covariance contribution -0.05
Combinations/Pair 1.38
Mean z-score -2.31
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.545884
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2382871 110 - 22407834
UGGAGGGAUUUUCUGAUGCCCGUCGGGGGAAUUCCUUGUGGGAAAGAAUUUCCUCGGCUGCUCCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAAUUGGUA
(((((((((((...((.((..(((((((((((((.((......))))))))))))))).))))((((.....))))...))))))))))).......((((....)))). ( -35.10)
>DroSec_CAF1 869 110 - 1
UGGAGGGAUUUUCUGAUGUCUGUCGAGGGAAUUUCUUGUGGGAAAGAAUUUCCUCGGCUGCUUCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAGUUGGUG
(((((((((((..((..((..((((((((((((.(((......))))))))))))))).))..((((.....)))))).)))))))))))((((((........)))))) ( -36.40)
>DroSim_CAF1 1539 110 - 1
UGGAGGGAUUUUCUGAUGUCUGUCGAGGGAAUUCCUUGUGGGAAAGAAUUUCCUCGGCUGCUUCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAGUUGGUG
(((((((((((..((..((..(((((((((((((.((......))))))))))))))).))..((((.....)))))).)))))))))))((((((........)))))) ( -36.40)
>DroEre_CAF1 1757 110 - 1
UGGAGGGAUUUUCUGAUGUCUUGCGAGGGAAUUCCUUGUGGGAUAGAAUUUCCUUGGCGGCUUCAUCGACGAGAUUCACAAAUUCCUUUACAUCAAAGCUAUAGUUGGUG
(((((((((((.....(((((..(((((.....)))))..)))))(((((((.(((..(....)..))).)))))))..)))))))))))((((((........)))))) ( -35.90)
>DroYak_CAF1 1560 110 - 1
UGGAGGGAUUUUCUGAUGUCUCGCGAGGGAACUCCUUGUGGGAAAGAAUUUCCUUGGCGGCUUUGUCGACGAGAUGCACAAAUUCCUUUACAUCAAAGCUAUAGUUGGUG
((((((((((((((....((((((((((.....)))))))))).)))(((((.((((((....)))))).)))))....)))))))))))((((((........)))))) ( -35.80)
>DroAna_CAF1 1839 110 - 1
UAUGAGGAUUUUCAGGCUCUUCCUGAGGAUACUCCUUAUGUGUUCGUACAUCCUUGGCUGCUUCAGCAACGAGAUGGACGAACUCUUCGACAUCAAAGCUAUAGUUCGUA
((((((((((((((((.....))))))))...)))))))).((((((.((((.(((..(((....))).))))))).))))))........................... ( -32.30)
>consensus
UGGAGGGAUUUUCUGAUGUCUGUCGAGGGAAUUCCUUGUGGGAAAGAAUUUCCUCGGCUGCUUCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAGUUGGUG
(((((((((((............(((((((((((...........))))))))))).......((((.....))))...)))))))))))((((((........)))))) (-23.05 = -23.00 +  -0.05) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:36 2006