Locus 831

Sequence ID 2L_DroMel_CAF1
Location 2,382,489 – 2,382,598
Length 109
Max. P 0.716745
window1348

overview

Window 8

Location 2,382,489 – 2,382,598
Length 109
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 81.71
Mean single sequence MFE -33.37
Consensus MFE -20.48
Energy contribution -21.12
Covariance contribution 0.64
Combinations/Pair 1.16
Mean z-score -2.17
Structure conservation index 0.61
SVM decision value 0.39
SVM RNA-class probability 0.716745
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2382489 109 - 22407834
AAACUGAAGCCCAAGGAGUGUAU-UUAAACAUUUCUUACCUUUCAUAGGAAACACGCUGUACAUCGUACUUAUCGUUGGCCUCCAGGGGGGCCAGCAGCUCGUCUUCAUU
....((((((..(((((((((..-....))))))))).(((.....)))......(((((((...)))).....(((((((((....))))))))))))..).))))).. ( -35.50)
>DroVir_CAF1 1877 108 - 1
UAACUACAGCUUAAGGAAUAUUUAAUUA-A-AAAAUUACCGUUCGUAUGAGACACGCUGCACAACGUACUCCUCAUUGGCCUCCAACUGGGCUAGCAGAUCGUUCUCGUU
...............((((...(((((.-.-..)))))..))))..((((((.(((((((.....(.......)..((((((......))))))))))..))))))))). ( -19.70)
>DroSec_CAF1 487 109 - 1
AAACGGAAGCCCAAGGAGCGUAU-UUAAACAUUUUUUACCUUUCAUAGGAAACGCGCUGUACAUCGUACUUAUCGUUGGCCUCCAGGGGGGCCAGCAGCUCGUCUUCAUU
....(((((...((((((.((..-....)).))))))..)))))...(((.(((.(((((((...)))).....(((((((((....)))))))))))).))).)))... ( -33.20)
>DroSim_CAF1 1157 109 - 1
AAACGGAAGCCCAAGGAGCAUAU-UUAAACAUUUUUUACCUUUCAUAGGAAACGCGCUGUACAUCGUACUUAUCGUUGGCCUCCAGGGGGGCCAGCAGCUCGUCUUCAUU
....((....))..((((.....-..............(((.....)))..(((.(((((((...)))).....(((((((((....)))))))))))).)))))))... ( -31.30)
>DroEre_CAF1 1375 109 - 1
AAACUAAAGACUAGGGAGAGGUU-UUGAUCAUUCCUUACCUCUCGUAGGACACACGCUGCACAGCGUACUUAUCGUUGGCCUCCAGGGGGGCCAGCAGCUCGUCUUCAUU
......(((((.((.(((((((.-..((....))...)))))))(((((....(((((....))))).))))).(((((((((....)))))))))..)).))))).... ( -42.20)
>DroYak_CAF1 1178 109 - 1
AAACUGAAGACUAAGUAGCGGCU-UUUAUCAUUCCUUACCUCUCAUAGGACACACGCUGCACGGCGUACUUAUCGUUGGCCUCCAGGGGGGCCAGCAGCUCGUCUUCAUU
....((((((((((((.......-........((((..........))))...(((((....))))))))))..(((((((((....))))))))).....))))))).. ( -38.30)
>consensus
AAACUGAAGCCCAAGGAGCGUAU_UUAAACAUUUCUUACCUUUCAUAGGAAACACGCUGCACAUCGUACUUAUCGUUGGCCUCCAGGGGGGCCAGCAGCUCGUCUUCAUU
...............((((...................(((.....)))....(((........))).......(((((((((....))))))))).))))......... (-20.48 = -21.12 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:35 2006