Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,381,130 – 2,381,228 |
Length | 98 |
Max. P | 0.793197 |
Location | 2,381,130 – 2,381,228 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 98.81 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -29.30 |
Energy contribution | -29.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.95 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2381130 98 - 22407834 ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCGAAAGA ...((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).))...... ( -29.10) >DroSec_CAF1 5749 98 - 1 ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUUUUAUUGUCCAUGUUAAUUGUUCGCCAAAGA ..(((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).)))..... ( -32.70) >DroSim_CAF1 2151 98 - 1 ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCCAAAGA ..(((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).)))..... ( -32.70) >DroYak_CAF1 2171 98 - 1 ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCGAAAGA ...((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).))...... ( -29.10) >consensus ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCCAAAGA ..(((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).)))..... (-29.30 = -29.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:34 2006