Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 293,082 – 293,174 |
Length | 92 |
Max. P | 0.602401 |
Location | 293,082 – 293,174 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -21.63 |
Consensus MFE | -15.59 |
Energy contribution | -15.93 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.13 |
Mean z-score | -1.60 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 293082 92 - 22407834 CGCAGAUGGCUUCACCAACUGAAAACGAUCAACAGCGUAAAUGAUGCUGUCAACUG--------UCUUAAGACGAAAUCUUA------------------AAAUCUUCAAAAAUGCGU (((((((((.((((.....))))........(((((((.....)))))))...)))--------))((((((.....)))))------------------)............)))). ( -18.20) >DroSec_CAF1 15094 118 - 1 CGCAGAUGGCUUCACCAACUGAAAACGAUCAACAGCGUAAAUGCCGCUGUCAACUAGGGAAUCUCCUUAAAACGAAAUCUUACAUCAAAGGUUACUACUUAAAUCAUCAAAAAUGCGU ((((((((..((((.....))))..((....((((((.......))))))....(((((.....)))))...))........))))..((((....)))).............)))). ( -22.60) >DroSim_CAF1 15083 118 - 1 CGCAGAUGGCUUCACCAACUGAAAACGAUCAGCAGCGUAAAUGCCGCUGUCAACUAGGGAAUCUCCUUAAAACGAAAUCUUACAUCAAAGAUUACUACUUAAAUCAUCAAAAAUGCGU ((((((((..((((.....))))...((.((((.(((....))).))))))...(((((.....))))).............))))...((((........))))........)))). ( -24.10) >consensus CGCAGAUGGCUUCACCAACUGAAAACGAUCAACAGCGUAAAUGCCGCUGUCAACUAGGGAAUCUCCUUAAAACGAAAUCUUACAUCAAAG_UUACUACUUAAAUCAUCAAAAAUGCGU ((((((((..((((.....))))..).))).((((((.......))))))....(((((.....)))))............................................)))). (-15.59 = -15.93 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:17 2006