Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,374,958 – 2,375,078 |
Length | 120 |
Max. P | 0.908726 |
Location | 2,374,958 – 2,375,078 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -43.12 |
Consensus MFE | -20.64 |
Energy contribution | -22.26 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.40 |
Mean z-score | -2.57 |
Structure conservation index | 0.48 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2374958 120 - 22407834 GUCCGGCGUUCUUUUCAAAAUCGCGGGGUUACCGGUAACUAUUCUAAGGAAAUUCACGGUUUCCAAGCCGUGGUUUUGAAAAGUUUGAUGGGCCCUUCGCCAGAUUUCAGGUGAGAAUAC (((((.((..(((((((((((((((((((((....))))).......((((((.....))))))...))))))))))))))))..)).)))))..((((((........))))))..... ( -46.50) >DroSec_CAF1 81773 120 - 1 GUCCGGCGUUCUUUUCAGAAUCGCGGGGUUACCGGUAACUAUUCUAAGGAAAUUCACUGUUUCCAAACCGUGGUUUUGAAAAGUUUGAUGGGCCCUUCGCCAGAUUUUAGGUGAGAAUAC (((((.((..(((((((((((((((((((((....))))).......((((((.....))))))...))))))))))))))))..)).)))))..((((((........))))))..... ( -47.10) >DroWil_CAF1 132567 120 - 1 CUGGGGACUCCGUUUCAAAACCGCAGGAUUUCCAGUGACGAUUCUAAGGAAGUUCAUGGUCUCGAGUCCGUGAUUAUGAAAGGUUUCGUGAGCACGUCGCCAGACAUCAGAAGUGUAGAU ((((.(((...(((((.(((((...((((((((...((....))...))))))))((((((.((....)).))))))....))))).).))))..))).))))((((.....)))).... ( -33.60) >DroAna_CAF1 90128 120 - 1 AUCCGGAGUUCGCUUCAGCACGGCAGGGUUUCCGGUUACGAUUCUCAGGAAGUUCACGGUUUCCAGGCCAUGAUUCUGGAAGGUUUCGUGGGCCCGCCGCCAAAUCUCCGGAGAGUAAAU .(((((((...((....)).((((.(((((..(((..((..(((.(((((...(((.((((....)))).))))))))))).)).)))..)))))))))......)))))))........ ( -45.30) >consensus GUCCGGAGUUCGUUUCAAAACCGCAGGGUUACCGGUAACGAUUCUAAGGAAAUUCACGGUUUCCAAGCCGUGAUUUUGAAAAGUUUCAUGGGCCCGUCGCCAGAUUUCAGGAGAGAAUAC .......(((((((((((((((((.((((((((..............))))))))..((((....)))))))))))))))(((((((((((.....))))))))))).....)))))).. (-20.64 = -22.26 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:33 2006