Locus 825

Sequence ID 2L_DroMel_CAF1
Location 2,356,667 – 2,356,787
Length 120
Max. P 0.683640
window1340

overview

Window 0

Location 2,356,667 – 2,356,787
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.33
Mean single sequence MFE -50.80
Consensus MFE -30.56
Energy contribution -31.15
Covariance contribution 0.59
Combinations/Pair 1.37
Mean z-score -1.71
Structure conservation index 0.60
SVM decision value 0.31
SVM RNA-class probability 0.683640
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2356667 120 + 22407834
CCAGCAACCUCCUGGGCAGCACCAACGACACGGUCCGUGCUCCGGCCAGCGGAUUCAUAGCCGACGGAGCCUGGCACUGGACCAGCGUCCUGCUGGACCGGUCCAGGCUGGAGCUGCAGC
((((.......))))(((((.((.......((((..(((.((((.....))))..))).))))....(((((((.(((((.(((((.....))))).)))))))))))))).)))))... ( -57.40)
>DroVir_CAF1 101797 120 + 1
CCAACAAUCUGCUGGGCAGCAACAAUGACACCGUUCAGGCACCCGCCAGCGGCUUCGUAGCCGAUGGCGCCUGGCACGGCAUUAGUGUGCUCCUGGAUCGCACACGCCUCGAGCUGCAGC
(((.(.....).)))(((((...((((...((((((((((....((((.(((((....))))).)))))))))).)))))))).((((((.........)))))).......)))))... ( -50.40)
>DroPse_CAF1 120252 120 + 1
CCAGCAAUCUCCUGGGCAGCAACAACGACACGGUCCAGGCCGCGGCCAGUGGCUUCAUAGCUGAUGGCGCCUGGCACUGGACGAGUGUGCUCUUGGAUCGCACUCGGCUGGAGCUGCAGC
((((.......))))(((((..((.(......((((((((((.(((((..((((....))))..)))).).)))).))))))(((((((.((...)).))))))).).))..)))))... ( -54.60)
>DroGri_CAF1 72976 120 + 1
CGAGCAAUUUAUUGGGCAGCAACAACGACACCGUUCAGGCACCAGCCAGCGGCUUCAUCGCCGAUGGAGCCUGGCACGGCACCAGCGUCCUCCUGGAUCGCACUCGACUCGAGUUGCAAC
...(((((((..(((((.((...((((....))))...))....((((..(((((((((...)))))))))))))...)).)))((((((....))).))).........)))))))... ( -45.60)
>DroMoj_CAF1 94215 120 + 1
CGAGCAAUUUACUGGGCAGCAUCAAUGAUACCGUGCAGGCGGCAGCGAGCGGCUUCAUUGCCGAUGGCGCCUGGCAUGCUACGAGCGUGCUUCUGGAUCGCACACGGCUCGAGCUGCAGC
...............(((((...........((((((((((.((.....((((......)))).)).))))).)))))...(((((((((.........))))...))))).)))))... ( -47.30)
>DroAna_CAF1 68449 120 + 1
CCAGCAAUUUGCUGGGAAGCAUCAACGAUACGGUGAGAGCUCCGGCCAGUGGCUUCAUUUCCGACGGAGCCUGGCACUGGACUAGUGUCCUGCUAGACCGGACGCGACUGGAGCUCCAGC
(((((.....)))))....((((........)))).((((((((((((((((((((.........))))))....)))))....((((((.(.....).))))))..))))))))).... ( -49.50)
>consensus
CCAGCAAUCUACUGGGCAGCAACAACGACACCGUCCAGGCACCGGCCAGCGGCUUCAUAGCCGAUGGAGCCUGGCACGGGACCAGCGUCCUCCUGGAUCGCACACGGCUCGAGCUGCAGC
((((.......))))(((((..........((((((((((.(((.....((((......)))).))).)))))).)))).......((((.........)))).........)))))... (-30.56 = -31.15 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:27 2006