Locus 824

Sequence ID 2L_DroMel_CAF1
Location 2,348,804 – 2,348,908
Length 104
Max. P 0.900491
window1339

overview

Window 9

Location 2,348,804 – 2,348,908
Length 104
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 78.35
Mean single sequence MFE -26.58
Consensus MFE -16.61
Energy contribution -16.08
Covariance contribution -0.53
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.62
SVM decision value 1.01
SVM RNA-class probability 0.900491
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2348804 104 - 22407834
---------UUGUU-CCUUC--UGCUCGGGCGAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACGAACAUAAAUUUGUUGCUCGUAAAUCCACUCGC--CAGACCAAAACACAAAAA
---------((((.-..((.--((.((.(((((....((.(....)))........(..(((((((((......)))))))))..)........))))--).)).)).)).))))... ( -24.70)
>DroVir_CAF1 93169 103 - 1
GGGUAUGAAGUGUC-CUGGC--GG-CAUGGCCAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACAAACAUAAAUUUGUUGCUCGUAAAUCCACUGGC---GGACC----CAGU----
((((.((.((((..-.((((--..-....))))....((.(....)))........(..(((((((((......)))))))))..).....))))..)---).)))----)...---- ( -30.80)
>DroPse_CAF1 110084 103 - 1
---------GUGCUACCCAG--UGCUCGGGCGAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACGUACAUAAAUUUGUUGCUCGUAAAUCCACUUGCCCCAGACC----CAGAAAAA
---------(..((....))--..)..((((((....((.(....)))........(..(((((((..........)))))))..)........))))))......----........ ( -24.00)
>DroGri_CAF1 63662 104 - 1
GGUAGUGAAGUGUU-CUGUU--GGCCAUGGCCAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACAAACAUAAAUUUGUUGCUCGUAAAUCCACUGGC---GGACC----CAGU----
(.(((((..((((.-((..(--(((....))))...)).)))).............(..(((((((((......)))))))))..).....))))).)---.....----....---- ( -30.00)
>DroAna_CAF1 59232 105 - 1
----------GGCU-CGGACGGUGCUCGGACGAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACGAACAUAAAUUUGUUGCUCGUAAAUCCACUUGC--CAGACCAAAACACAAAAG
----------((((-.((..((((.....((((....((.(....)))............((((((((......)))))))))))).....))))..)--))).))............ ( -26.00)
>DroPer_CAF1 121036 103 - 1
---------GUGCUACCCAG--UGCUCGGGCGAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACGUACAUAAAUUUGUUGCUCGUAAAUCCACUUGCCCCAGACC----CAGAAAAA
---------(..((....))--..)..((((((....((.(....)))........(..(((((((..........)))))))..)........))))))......----........ ( -24.00)
>consensus
_________GUGCU_CCGAC__UGCUCGGGCGAUUAAGCACGCAAGGCAAAUAAAAAUAGGCAACGAACAUAAAUUUGUUGCUCGUAAAUCCACUUGC__CAGACC____CAGAAAAA
........................((...((((....((.(....)))........(..(((((((((......)))))))))..)........))))...))............... (-16.61 = -16.08 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:26 2006