Locus 822

Sequence ID 2L_DroMel_CAF1
Location 2,344,873 – 2,344,967
Length 94
Max. P 0.776910
window1337

overview

Window 7

Location 2,344,873 – 2,344,967
Length 94
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 67.72
Mean single sequence MFE -26.07
Consensus MFE -11.75
Energy contribution -11.99
Covariance contribution 0.23
Combinations/Pair 1.22
Mean z-score -2.22
Structure conservation index 0.45
SVM decision value 0.55
SVM RNA-class probability 0.776910
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2344873 94 - 22407834
UCAAGAUUUUAAGAGGAUUUUAAUUGUUAACGUAUGCCCUUUU-------------UAAAGG----GGAAAGAGAACGAAUGGAAAUGUUAUCA--------AUGACCUCCUCUUUUCA
....((....(((((((.....((((.((((((.(.(((((..-------------..))))----).).......(.....)..)))))).))--------))....))))))).)). ( -20.70)
>DroSec_CAF1 51746 117 - 1
UAAAGAUUUUAAGAGGAUUUUAAUUGUUAACGUAUGCCCUUUUU--AUCUUUAGUUUAAAGGGUAGGGAAAGAGAACGAAUGCAAAUUUAAUCGAUUGACCUAUGACCUCUUGUUUUCA
....((...(((((((..................((((((((..--((.....))..))))))))((..((..((..((((....))))..))..))..)).....)))))))...)). ( -26.00)
>DroEre_CAF1 56510 106 - 1
UCAAGAUUUUAAGAGGAUUUCCAUGGUUUACUUAUGCUCUUUUUUCCAUUUUAGUAUAAAGAGUAGAGAAAGAUAGCGACUGAGUGGC-C------------AUGACGUCCUCUUUUCA
....((....((((((((...(((((((.(((((((((.(((((((.(((((.......))))).)))))))..))))..))))))))-)------------)))..)))))))).)). ( -31.50)
>consensus
UCAAGAUUUUAAGAGGAUUUUAAUUGUUAACGUAUGCCCUUUUU_____UUUAGU_UAAAGGGUAGGGAAAGAGAACGAAUGAAAAUCUAAUC_________AUGACCUCCUCUUUUCA
....((....(((((((..(((.(((((......((((((((...............)))))))).........)))))((....))................)))..))))))).)). (-11.75 = -11.99 +   0.23) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:24 2006