Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,344,873 – 2,344,967 |
Length | 94 |
Max. P | 0.776910 |
Location | 2,344,873 – 2,344,967 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 67.72 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -11.75 |
Energy contribution | -11.99 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.22 |
Mean z-score | -2.22 |
Structure conservation index | 0.45 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.776910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2344873 94 - 22407834 UCAAGAUUUUAAGAGGAUUUUAAUUGUUAACGUAUGCCCUUUU-------------UAAAGG----GGAAAGAGAACGAAUGGAAAUGUUAUCA--------AUGACCUCCUCUUUUCA ....((....(((((((.....((((.((((((.(.(((((..-------------..))))----).).......(.....)..)))))).))--------))....))))))).)). ( -20.70) >DroSec_CAF1 51746 117 - 1 UAAAGAUUUUAAGAGGAUUUUAAUUGUUAACGUAUGCCCUUUUU--AUCUUUAGUUUAAAGGGUAGGGAAAGAGAACGAAUGCAAAUUUAAUCGAUUGACCUAUGACCUCUUGUUUUCA ....((...(((((((..................((((((((..--((.....))..))))))))((..((..((..((((....))))..))..))..)).....)))))))...)). ( -26.00) >DroEre_CAF1 56510 106 - 1 UCAAGAUUUUAAGAGGAUUUCCAUGGUUUACUUAUGCUCUUUUUUCCAUUUUAGUAUAAAGAGUAGAGAAAGAUAGCGACUGAGUGGC-C------------AUGACGUCCUCUUUUCA ....((....((((((((...(((((((.(((((((((.(((((((.(((((.......))))).)))))))..))))..))))))))-)------------)))..)))))))).)). ( -31.50) >consensus UCAAGAUUUUAAGAGGAUUUUAAUUGUUAACGUAUGCCCUUUUU_____UUUAGU_UAAAGGGUAGGGAAAGAGAACGAAUGAAAAUCUAAUC_________AUGACCUCCUCUUUUCA ....((....(((((((..(((.(((((......((((((((...............)))))))).........)))))((....))................)))..))))))).)). (-11.75 = -11.99 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:24 2006