Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,341,142 – 2,341,276 |
Length | 134 |
Max. P | 0.914186 |
Location | 2,341,142 – 2,341,241 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 87.04 |
Mean single sequence MFE | -19.43 |
Consensus MFE | -15.76 |
Energy contribution | -16.43 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.19 |
Mean z-score | -1.69 |
Structure conservation index | 0.81 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2341142 99 - 22407834 AAACUCUCAGAUACCAUAAAAUAAUGGAUAAGAGUAUGUAGAAAACAAAGUAUCUUAGAUCGA--AUCUAAUGUACUAUAUUGUUGUAUCCCUCCAAAGUU ..(((((...((.((((......)))))).)))))........((((((((((.((((((...--)))))).)))))...)))))................ ( -16.90) >DroSec_CAF1 47641 101 - 1 AAACUCGUAGAUUCCAUAAAAUAAUGGAUAAGAGUAUGCAGAAAGCAAAGUAUCUUAGAUCGAAAACCAGGUAUACUAUAUUGUUGCCCUGCUCUAAAGUA ..((((......(((((......)))))...))))..((((..(((((((((((((.(........).))).)))))...)))))...))))......... ( -19.60) >DroSim_CAF1 47733 99 - 1 AAACUCGUAGAUUCCAUAAAAUAAUGGAUAAGAGUAUGCAGAAAGCAAAGUAUCUUAGAUCGA--ACCUAUUGUACUAUAUUGUUGCCCUGCUCUAAAGUA ..((((......(((((......)))))...))))..((((..((((((((((..(((.....--..)))..)))))...)))))...))))......... ( -21.80) >consensus AAACUCGUAGAUUCCAUAAAAUAAUGGAUAAGAGUAUGCAGAAAGCAAAGUAUCUUAGAUCGA__ACCUAAUGUACUAUAUUGUUGCCCUGCUCUAAAGUA ..((((......(((((......)))))...))))..((((..((((((((((.((((.........)))).)))))...)))))...))))......... (-15.76 = -16.43 + 0.68)
Location | 2,341,178 – 2,341,276 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 86.14 |
Mean single sequence MFE | -12.73 |
Consensus MFE | -10.00 |
Energy contribution | -9.67 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.10 |
Mean z-score | -2.70 |
Structure conservation index | 0.79 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2341178 98 + 22407834 -UCGAUCUAAGAUACUUUGUUUUCUACAUACUCUUAUCCAUUAUUUUAUGGUAUCUGAGAGUUUUCUCCUCCCUCAUCUUUUCAUCAAUUGGAGUAUUC---- -..(((..(((((....(((.....))).(((((((.((((......))))....))))))).............)))))...))).............---- ( -14.20) >DroSec_CAF1 47678 98 + 1 UUCGAUCUAAGAUACUUUGCUUUCUGCAUACUCUUAUCCAUUAUUUUAUGGAAUCUACGAGUUUUCUUCUUCCUUAACUUUUCAUCAAUU-----AUCCAUCA ((((...(((((.....(((.....)))...)))))(((((......))))).....)))).............................-----........ ( -12.20) >DroSim_CAF1 47769 97 + 1 -UCGAUCUAAGAUACUUUGCUUUCUGCAUACUCUUAUCCAUUAUUUUAUGGAAUCUACGAGUUUUCUUCUUCCUUAACUUUUCAUCAAUA-----AUCCAUCA -(((...(((((.....(((.....)))...)))))(((((......))))).....)))..............................-----........ ( -11.80) >consensus _UCGAUCUAAGAUACUUUGCUUUCUGCAUACUCUUAUCCAUUAUUUUAUGGAAUCUACGAGUUUUCUUCUUCCUUAACUUUUCAUCAAUU_____AUCCAUCA ...(((..(((......(((.....))).((((.(((((((......)))))...)).))))...............)))...)))................. (-10.00 = -9.67 + -0.33)
Location | 2,341,178 – 2,341,276 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 86.14 |
Mean single sequence MFE | -15.70 |
Consensus MFE | -11.76 |
Energy contribution | -11.43 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.89 |
Structure conservation index | 0.75 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2341178 98 - 22407834 ----GAAUACUCCAAUUGAUGAAAAGAUGAGGGAGGAGAAAACUCUCAGAUACCAUAAAAUAAUGGAUAAGAGUAUGUAGAAAACAAAGUAUCUUAGAUCGA- ----.....((((.(((........)))...))))((((....)))).(((.((((......)))).(((((...(((.....))).....))))).)))..- ( -17.00) >DroSec_CAF1 47678 98 - 1 UGAUGGAU-----AAUUGAUGAAAAGUUAAGGAAGAAGAAAACUCGUAGAUUCCAUAAAAUAAUGGAUAAGAGUAUGCAGAAAGCAAAGUAUCUUAGAUCGAA .....(((-----....((((....................((((......(((((......)))))...)))).(((.....)))...))))....)))... ( -14.80) >DroSim_CAF1 47769 97 - 1 UGAUGGAU-----UAUUGAUGAAAAGUUAAGGAAGAAGAAAACUCGUAGAUUCCAUAAAAUAAUGGAUAAGAGUAUGCAGAAAGCAAAGUAUCUUAGAUCGA- .....(((-----(...((((....................((((......(((((......)))))...)))).(((.....)))...))))...))))..- ( -15.30) >consensus UGAUGGAU_____AAUUGAUGAAAAGUUAAGGAAGAAGAAAACUCGUAGAUUCCAUAAAAUAAUGGAUAAGAGUAUGCAGAAAGCAAAGUAUCUUAGAUCGA_ ..............................((...((((..((((......(((((......)))))...)))).(((.....))).....))))...))... (-11.76 = -11.43 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:23 2006