Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 282,292 – 282,412 |
Length | 120 |
Max. P | 0.828758 |
Location | 282,292 – 282,412 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -22.58 |
Energy contribution | -23.33 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.46 |
Mean z-score | -1.64 |
Structure conservation index | 0.65 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 282292 120 - 22407834 CAUCACGGGCAACGUCUCCUUCAUCCUGCUUUACAUCAUCUGGCUGCACAUUGUUCGCUACUUCAGUGGCGAGUGGGUGUAUCCCAUUCUGGAAGUGCUGCCCGCAUACCUGCGCUACGU ......(((((.((..(((........(((...........)))(((((.(..((((((((....))))))))..)))))).........)))..)).)))))(((....)))....... ( -38.60) >DroPse_CAF1 4137 120 - 1 CGUCACGGGCAACAUUUCCUUCAUCCUACUGUACAUUAUUUGGCUGCACAUAGUUCGUUACUUCAGCGGCGAGUGGGUCUAUCCCAUUUUGGAGGUGUUACCUCUGGCGUUCCGCUACCU (((((.(((.(((((((((.......................(((((....(((.....)))...)))))(((((((.....))))))).))))))))).))).)))))........... ( -38.30) >DroWil_CAF1 5004 120 - 1 CAUUGUCGGUAAUCUCACCUUUAUGCUACUCUACAUCAUUUGGUUGCACAUAGUUCGCUAUUUCAGUGGACUCUGGGUGUAUCCUUUGCUGGAAGUAUUACCAUUUCCUUUCCGCUACCU .......((((((((((((....(((.(((...........))).)))((.((((((((.....)))))))).))))))..(((......))))).)))))).................. ( -27.00) >DroYak_CAF1 4386 120 - 1 CAUCACGGGCAACGUCUCCUUCAUCUUGCUCUACAUCAUCUGGCUGCACAUCGUGCGAUACUUCAGUGGCGAGUGGGUGUACCCUAUUCUGGAGGUGCUGCCCGUAUACCUGCGAUACGU ....(((((((.(..((((...........((((...........((((...))))((....)).)))).(((((((.....))))))).))))..).)))))))............... ( -37.30) >DroAna_CAF1 5749 120 - 1 AGUCACCGGCAACAUGGCCUUCAUCAUUCUCUACAUCAUUUGGCUGCACAUAGUCCGAUACUUCAGCGGUGAAUGGGUCUAUCCCAUACUAGAGGUGUUGCCCCUGCCACUCCGCUACCU ..((((((((......))).......................((((.....(((.....))).)))))))))(((((.....)))))..(((.((.((.((....)).)).)).)))... ( -29.20) >DroPer_CAF1 4133 120 - 1 CGUCACGGGCAACAUUUCCUUUAUCCUACUGUACAUUAUUUGGCUGCACAUAGUUCGUUACUUCAGCGGCGAGUGGGUCUAUCCCAUUUUGGAGGUGUUACCUCUGGCGUUCCGCUACCU (((((.(((.(((((((((.......................(((((....(((.....)))...)))))(((((((.....))))))).))))))))).))).)))))........... ( -38.30) >consensus CAUCACGGGCAACAUCUCCUUCAUCCUACUCUACAUCAUUUGGCUGCACAUAGUUCGAUACUUCAGCGGCGAGUGGGUCUAUCCCAUUCUGGAGGUGUUACCCCUGCCCCUCCGCUACCU ......((((((((..(((.......................(((((....(((.....)))...)))))(((((((.....))))))).)))..))))))))................. (-22.58 = -23.33 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:16 2006