Locus 82

Sequence ID 2L_DroMel_CAF1
Location 282,292 – 282,412
Length 120
Max. P 0.828758
window124

overview

Window 4

Location 282,292 – 282,412
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.06
Mean single sequence MFE -34.78
Consensus MFE -22.58
Energy contribution -23.33
Covariance contribution 0.76
Combinations/Pair 1.46
Mean z-score -1.64
Structure conservation index 0.65
SVM decision value 0.71
SVM RNA-class probability 0.828758
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 282292 120 - 22407834
CAUCACGGGCAACGUCUCCUUCAUCCUGCUUUACAUCAUCUGGCUGCACAUUGUUCGCUACUUCAGUGGCGAGUGGGUGUAUCCCAUUCUGGAAGUGCUGCCCGCAUACCUGCGCUACGU
......(((((.((..(((........(((...........)))(((((.(..((((((((....))))))))..)))))).........)))..)).)))))(((....)))....... ( -38.60)
>DroPse_CAF1 4137 120 - 1
CGUCACGGGCAACAUUUCCUUCAUCCUACUGUACAUUAUUUGGCUGCACAUAGUUCGUUACUUCAGCGGCGAGUGGGUCUAUCCCAUUUUGGAGGUGUUACCUCUGGCGUUCCGCUACCU
(((((.(((.(((((((((.......................(((((....(((.....)))...)))))(((((((.....))))))).))))))))).))).)))))........... ( -38.30)
>DroWil_CAF1 5004 120 - 1
CAUUGUCGGUAAUCUCACCUUUAUGCUACUCUACAUCAUUUGGUUGCACAUAGUUCGCUAUUUCAGUGGACUCUGGGUGUAUCCUUUGCUGGAAGUAUUACCAUUUCCUUUCCGCUACCU
.......((((((((((((....(((.(((...........))).)))((.((((((((.....)))))))).))))))..(((......))))).)))))).................. ( -27.00)
>DroYak_CAF1 4386 120 - 1
CAUCACGGGCAACGUCUCCUUCAUCUUGCUCUACAUCAUCUGGCUGCACAUCGUGCGAUACUUCAGUGGCGAGUGGGUGUACCCUAUUCUGGAGGUGCUGCCCGUAUACCUGCGAUACGU
....(((((((.(..((((...........((((...........((((...))))((....)).)))).(((((((.....))))))).))))..).)))))))............... ( -37.30)
>DroAna_CAF1 5749 120 - 1
AGUCACCGGCAACAUGGCCUUCAUCAUUCUCUACAUCAUUUGGCUGCACAUAGUCCGAUACUUCAGCGGUGAAUGGGUCUAUCCCAUACUAGAGGUGUUGCCCCUGCCACUCCGCUACCU
..((((((((......))).......................((((.....(((.....))).)))))))))(((((.....)))))..(((.((.((.((....)).)).)).)))... ( -29.20)
>DroPer_CAF1 4133 120 - 1
CGUCACGGGCAACAUUUCCUUUAUCCUACUGUACAUUAUUUGGCUGCACAUAGUUCGUUACUUCAGCGGCGAGUGGGUCUAUCCCAUUUUGGAGGUGUUACCUCUGGCGUUCCGCUACCU
(((((.(((.(((((((((.......................(((((....(((.....)))...)))))(((((((.....))))))).))))))))).))).)))))........... ( -38.30)
>consensus
CAUCACGGGCAACAUCUCCUUCAUCCUACUCUACAUCAUUUGGCUGCACAUAGUUCGAUACUUCAGCGGCGAGUGGGUCUAUCCCAUUCUGGAGGUGUUACCCCUGCCCCUCCGCUACCU
......((((((((..(((.......................(((((....(((.....)))...)))))(((((((.....))))))).)))..))))))))................. (-22.58 = -23.33 +   0.76) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:16 2006