Locus 818

Sequence ID 2L_DroMel_CAF1
Location 2,338,714 – 2,338,816
Length 102
Max. P 0.641694
window1331

overview

Window 1

Location 2,338,714 – 2,338,816
Length 102
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 72.42
Mean single sequence MFE -28.05
Consensus MFE -17.18
Energy contribution -17.68
Covariance contribution 0.50
Combinations/Pair 1.33
Mean z-score -1.27
Structure conservation index 0.61
SVM decision value 0.22
SVM RNA-class probability 0.641694
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2338714 102 + 22407834
UUAUUCACU-UCUUUAAUUUUGCAUAU-CUCUGCAUAUCAUAU-GCUUUCUAGGAACUGGUGCUCGUUGCCAGCACGGUGGUGAGUGCAUCGAGGGUCCUGGACU
.........-...........((((((-...........))))-))..(((((((.((.(..((((..(((.....)))..))))..).....)).))))))).. ( -29.40)
>DroSec_CAF1 45258 95 + 1
UUAUUCACU-UAUUUAAUUUUGCAUAU-CUCUG-------UAU-GCUUUCUAGGAACUGGUGCUCGUUGCCAGCACGGUGGUGAGUGCAUCGAAGGGCCUGGGCU
.........-...........((((((-....)-------)))-))..((((((..((.(..((((..(((.....)))..))))..).....))..)))))).. ( -30.30)
>DroEre_CAF1 50360 95 + 1
UUAUUUAUUAUAUUUAACUUUGCAUAU-UUUUG-------UGU-G-UUUCUAGGAACUGGUGCUCGCUGCCAGCACGGUGGUGAGUGCAUCGAGGGUCCUGGGCU
.....................((((((-....)-------)))-)-).(((((((.((.(..(((((..((.....))..)))))..).....)).))))))).. ( -31.40)
>DroYak_CAF1 47203 91 + 1
UUAUUUACUUUAUUUAACC-----UAU-UUUUG-------AAU-GCUUUCUAGGAACUGGAGCUCGUUGCCAGCACGGUGGUGAGUGCAUCGAGGGACCCGGGCU
.................((-----(.(-(((((-------(.(-((..(((((...)))))(((((..(((.....)))..)))))))))))))))....))).. ( -21.90)
>DroAna_CAF1 49179 95 + 1
AAGUUCAGG-UUUUGAGUUGUA-AUAUUAUUUC-------UUU-CCUACCCAGGAACUGGAGCUCGGUGCCAGCACGGUGGAGAGUGCAUUGAAGGACCUGGGUU
.((..((((-((((....((((-.........(-------(((-((.(((..((.((((.....)))).)).....)))))))))))))....))))))))..)) ( -27.30)
>DroPer_CAF1 104600 80 + 1
----------CAUUCAAC-------GU-UUUUG-------UGUCGUAUUCUAGGCACCGGGGCCCGUUGCCAGCACGGAGGUGAAUGCAUGGAGGGGCCCGGCCU
----------........-------..-....(-------((((........)))))((((.(((..(((...(((....)))...)))....))).)))).... ( -28.00)
>consensus
UUAUUCACU_UAUUUAACUUUG_AUAU_UUUUG_______UAU_GCUUUCUAGGAACUGGUGCUCGUUGCCAGCACGGUGGUGAGUGCAUCGAGGGACCUGGGCU
................................................((((((..((.(..(((((((((.....)))))))))..).....))..)))))).. (-17.18 = -17.68 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:18 2006